PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462848079

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HSF

Protein Properties

Length: 507aa MW: 55935 Da PI: 4.5574

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462848079	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.2	7.2e-35	37	128	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++e+++d+++++++sw +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i+ 462848079 37 FLMKTHEMVDDPATDDIVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTIN 124 9*******************99*************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k 462848079 125 RRKP 128 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.8E-39	31	121	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.17E-35	33	126	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.2E-61	33	126	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.9E-19	37	60	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.2E-31	37	126	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.9E-19	75	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	76	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.9E-19	88	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MEGGVAAAAA APAXXXXXXX XXXXXXXXPP TAPPPPFLMK THEMVDDPAT DDIVSWGPGN 60 NSFVVWNTPE FARDLLPKYF KHSNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHLL 120 KTINRRKPSL QGNSQPQQPQ LQNAPVPACV EVGKFGLEEE IERLKRDKNV LMQELVRLRQ 180 QQQTTDHQLQ TLGKRLQGME SRQQQMMSFL AKAMQSPGFL AQFVQQNENS RRRIVAVNKK 240 RRLPKQDGGL DSESASLDGQ IIKYQPMINE AAKAMLRKIL NQDTSHRFEA VGNSDNFLLD 300 NYMPAAQGFD SSSSTRNSGV TLAEVPANSG LPYIATSSGL STICSSSATP EMQCPVVLDN 360 NSSKQVPDMS AGPPVPPVPK PITPGPSDIS IPEFSDLQDI VTDDSVDIPG GSFDIPGPEG 420 VFPLPEEGDD SVPIETDEMM YNDETQKLPG IIDSFWEQFL VASPISGDND EVDSGALETP 480 QENGWNKMEN LANLTEQMGL LSSNHKV

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MEGGVAAAAA APAXXXXXXX XXXXXXXXPP TAPPPPFLMK THEMVDDPAT DDIVSWGPGN  60
NSFVVWNTPE FARDLLPKYF KHSNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHLL  120
KTINRRKPSL QGNSQPQQPQ LQNAPVPACV EVGKFGLEEE IERLKRDKNV LMQELVRLRQ  180
QQQTTDHQLQ TLGKRLQGME SRQQQMMSFL AKAMQSPGFL AQFVQQNENS RRRIVAVNKK  240
RRLPKQDGGL DSESASLDGQ IIKYQPMINE AAKAMLRKIL NQDTSHRFEA VGNSDNFLLD  300
NYMPAAQGFD SSSSTRNSGV TLAEVPANSG LPYIATSSGL STICSSSATP EMQCPVVLDN  360
NSSKQVPDMS AGPPVPPVPK PITPGPSDIS IPEFSDLQDI VTDDSVDIPG GSFDIPGPEG  420
VFPLPEEGDD SVPIETDEMM YNDETQKLPG IIDSFWEQFL VASPISGDND EVDSGALETP  480
QENGWNKMEN LANLTEQMGL LSSNHKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	5e-25	35	130	18	124	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462848079

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466076.1	0.0	heat stress transcription factor A-1
Swissprot	Q84T61	0.0	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A0E0KLP9	0.0	A0A0E0KLP9_ORYPU; Uncharacterized protein
STRING	OPUNC03G38490.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-118	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]