PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462847998 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | LBD | ||||||||
Protein Properties | Length: 257aa MW: 27775.7 Da PI: 9.9675 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 59.3 | 1.1e-18 | 18 | 87 | 1 | 68 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpa.eqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAear 68 +CaaC +l r+C+++Cv+ap+fpa ++p++f +vh FGa+nv ++l +p+++ r d++++lv +A r 462847998 18 RCAACELLDRACESGCVFAPHFPAgDDPARFGAVHAAFGADNVARFLGCVPPDRrRADVARCLVLNAPRR 87 6***********************556***********************98886899******999777 PP | |||||||
2 | DUF260 | 53.2 | 8.8e-17 | 118 | 208 | 6 | 100 |
DUF260 6 kvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++lrr C+++C+l yfp e+ +++fa+vh +Gasn+ ++p e r +a+++ vyeA+ r+ Pv Ga+g +l q ++ ++ +la++++e 462847998 118 RHLRRPCVPNCPLWSYFPPEDeSERFAAVHAAYGASNL-----DTPAEPRGAAAATCVYEARRRQTAPVFGATGDVLLPQTAIKMTEGQLAATHKE 208 89***************776549**************8.....568888*****************************************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.744 | 17 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-17 | 18 | 88 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 10.373 | 112 | 209 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.8E-16 | 118 | 206 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSSKGKEAAR APSSPGGRCA ACELLDRACE SGCVFAPHFP AGDDPARFGA VHAAFGADNV 60 ARFLGCVPPD RRRADVARCL VLNAPRRLAG RGVPAHRVRA QLPRGRRPGQ RRRRWKGRHL 120 RRPCVPNCPL WSYFPPEDES ERFAAVHAAY GASNLDTPAE PRGAAAATCV YEARRRQTAP 180 VFGATGDVLL PQTAIKMTEG QLAATHKELA AYVGEEPSQG IQVSFLSAST VPYYIISRLS 240 SVFDCCHSRS LKQLISA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-13 | 11 | 212 | 2 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-13 | 11 | 212 | 2 | 114 | LOB family transfactor Ramosa2.1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462847998 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 3e-15 | LOB domain-containing protein 20 |