PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462847932

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 290aa MW: 31988 Da PI: 9.3216

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462847932	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.8e-10	81	112	3	34
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k+ rr+++NReAAr+sR+RKka+i+ Le 462847932 81 NDKALRRLAQNREAARKSRLRKKAYIQTLESS 112 6899*************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-8	77	124	No hit	No description
SMART	SM00338	5.0E-4	79	143	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.852	81	123	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.3E-7	82	115	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.75E-7	83	123	No hit	No description
PROSITE pattern	PS00036	0	86	101	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.3E-11	174	227	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MGIYDYDRRG RQHPYAAWGG EPFRPDTAVT APQPAATVAF PNMDLTRAEA KLESQAHEDA 60 PPVEEAAPSS DSFGHDDDRP NDKALRRLAQ NREAARKSRL RKKAYIQTLE SSRLKLAQME 120 QELTRVRRQQ GAFVGGRTGE SAMGLTTAPV VDPGAAAFEL DYARWVEEQG RHAVELRAAL 180 HAEAPDPQRH HHQLRALVDA ALAHYDALFA AKSAAARMDA FHVMAGAVGK LAGLASFVEQ 240 ADHLRQQTLR NMHKILTPQQ AARGLLALAD YCQRLRALSS LWAARPREPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462847932

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT034698	3e-58	BT034698.1 Zea mays full-length cDNA clone ZM_BFb0012B03 mRNA, complete cds.
GenBank	BT038664	3e-58	BT038664.1 Zea mays full-length cDNA clone ZM_BFb0304N24 mRNA, complete cds.
GenBank	EU956720	3e-58	EU956720.1 Zea mays clone 1571658 transcription factor TGA4 mRNA, complete cds.
GenBank	KJ727561	3e-58	KJ727561.1 Zea mays clone pUT5421 bZIP transcription factor (bZIP107) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021314235.1	2e-68	transcription factor TGAL10
Swissprot	Q6ZBS8	2e-51	TGL10_ORYSJ; Transcription factor TGAL10
TrEMBL	A0A0D3GWW9	2e-81	A0A0D3GWW9_9ORYZ; Uncharacterized protein
STRING	OBART08G04650.1	3e-82	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP29534	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	6e-42	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]