PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462847466
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 402aa    MW: 43387.4 Da    PI: 8.9262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462847466genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-0594116123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  462847466  94 FVCEICHKGFQRDQNLQLHRRGH 116
                89*******************88 PP
2zf-C2H212.70.00039188206523
                TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                dCg++Fsr++++++H   +
  462847466 188 DCGTVFSRRDSFVTHRAFC 206
                9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.22E-586128No hitNo description
Gene3DG3DSA:3.30.160.605.8E-593116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.42794121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSGADARESI GSFPSVRNTA TEPEEFLQRQ YNVVKPFMGS PPELGHEDGN LQSVTGTSEP  60
LAAKKKKRSL PGTPDPSAEV IALSPRTLMA TNRFVCEICH KGFQRDQNLQ LHRRGHNLPK  120
RVYVCPEASC VHHNPARALG DLTGIKKHFC RKHGEKKWKC ERCAKRYAVH SDWKAHSKVC  180
GTREYKCDCG TVFSRRDSFV THRAFCDALA QENNKLAQPM NMATPLQLPP LTMAGCMLSS  240
LGARSFASPP AFFSASKMDL DGPSGDPGMG FSSAGSASMS ATALLHFPTG GFGPPPMLGG  300
PDRLPTMSPF APVRAPFDGL SLPGQTQLVG FDVGGLPPGQ LYRGDGAQSV GSMTRAIGSL  360
MHGGQLVDPR RPDDKRVVDY MGVDDHSFNG VAPFGPHMGP WT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33154221370Zinc finger protein JACKDAW
5b3h_F1e-33154221370Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462847466
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666521e-147BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817951.10.0protein indeterminate-domain 2-like
TrEMBLA0A2T7DBX21e-180A0A2T7DBX2_9POAL; Uncharacterized protein
STRINGSi001316m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-98indeterminate(ID)-domain 2