![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462846785 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 972aa MW: 106214 Da PI: 5.6815 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.2 | 3.5e-41 | 151 | 228 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegCeadl+ ak+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ 462846785 151 ACQVEGCEADLTAAKDYHRRHKVCEMHAKATTAMVGNTVQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTRP 228 5**************************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.1E-34 | 144 | 213 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.582 | 149 | 226 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-38 | 150 | 230 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.2E-30 | 152 | 225 | IPR004333 | Transcription factor, SBP-box |
SMART | SM00248 | 0.34 | 756 | 785 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 10.392 | 756 | 823 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.6E-9 | 756 | 862 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.1E-8 | 758 | 864 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.70E-10 | 761 | 861 | No hit | No description |
SMART | SM00248 | 410 | 802 | 832 | IPR002110 | Ankyrin repeat |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 972 aa Download sequence Send to blast |
MEAARLDAQS SRLYGGGLVE LDLNRHEKRV FGWDLNDWNW DSERFVATPV PASVANGSAL 60 NSSPSSSEEA EAEAARNGAV RGDSDKRKRV VVIDDDDTED QDLVGNSSGA LSLRIGGDSL 120 GAGTVENGGG YEEERNGKKI KVQGGSSSGP ACQVEGCEAD LTAAKDYHRR HKVCEMHAKA 180 TTAMVGNTVQ RFCQQCSRFH LLQEFDEGKR SCRRRLAGHN RRRRKTRPDI GFGGTASIED 240 KVSNYLLLSL LGICANLNSG NSEHSSGQEL LSNLLRNLGT VAKSLEPKEL SKLLEACQSL 300 QNGSNAGTSG TANALVNNSA AEAAGPSNSK PLFMNGNQCG QASSSAMPVQ SKATMAATPE 360 PRACKVKDFD LNDTCDDMEG FENGEEGSPT PAFKTADSPN CPSWMQQDST QSPPQTSGNS 420 DSTSTQSLSS SNGDAQCRTD KIVFKLFEKV PSDLPPVLRS QILGWLSSSP TDIESYIRPG 480 CIILTVYLRL VESAWRELSD NMSSHLDKLL NSSSDNFWAS GLVLVMVRHQ LAFMYNGRVM 540 LDRPLAPSSY HYCRILCVRP VAAPYSAAVN FKVEGINLIN ASSRVICSFE GRCLFQEDTA 600 IVADDAELED RDTECLSFCC PLPGSRGRGF IEVEDSGFSN GFFPFIIAEQ DVCSEVTELE 660 SIFESSSHEL ADVDDVARSQ AFEFLNELGW LLHRANSISK QDKTEPPLAT FNLWRFRNLG 720 IFAMEREWCA VMKMLLDFLF IGLVDVGSQS PEEVVLSENL LHVAVRRKSV QMVRFLLRYK 780 SNKNSKGTAQ MHLFRPDALG PSTITPLHIA ASTGDAEDVL DALTDDPGLV GISAWKNARD 840 GTGFTPEDYA RQRGNDAYLN LVQKKIDKHL SKGHVVLGVP SSMCPVTNDG VKPGNVSLEI 900 CRSMPMEKCH LCSRQALKYP RSAVRTFLYR PAMLTMMGVA VVCVCVGILL HTMPKVYAAP 960 TFRWELLERG AM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-31 | 145 | 225 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00603 | PBM | Transfer from AT2G47070 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462846785 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466159.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Swissprot | Q75LH6 | 0.0 | SPL6_ORYSJ; Squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A0A9REY0 | 0.0 | A0A0A9REY0_ARUDO; Uncharacterized protein | ||||
STRING | Sb01g002530.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1998 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|