PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462846234

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 624aa MW: 69006.7 Da PI: 7.9755

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462846234	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00074	159	180	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H 462846234 159 KCTKCSREFCSSINFRRHTRVH 180 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.702	158	180	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	160	180	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence Send to blast
MGRDGFVKNQ EIAATSPPAA VHPPAVPGRP AGSLRCCCSS PAVRQRLRYS KSVRPLSLIQ 60 TAARTPSCSK ALTIAAARTR HACCRPAAPF QTSELEMNAS KRYNHITDKD NAETARDIMT 120 TSGQIQPLKI PDAVVALAQA AAKANGWPLF SPPKLQLDKC TKCSREFCSS INFRRHTRVH 180 RRTLKLDKDF PKNRDHIAAF WDKLTVDEAK TILSFLDVAI EDLIQTKASL HLHVSSNELF 240 SVLDEASENT FLCTNTTAYI QKFLFEGEAD KVATELKNVV ACASYMLEKK LVEAWSADKA 300 AEALRCQKLL VEEEEAAQKR QAELMERKRM KKLRQKEQRS KDPKDEEVSV HLSEIVIVAS 360 GSPKIQSLKA VSDPGLYEQE DSQHPQFEAQ DDNGFNVGRS VEGTSCDSGH EMGADVITTQ 420 QVISRHHIGG TENLAQNSFS STTALASKHP ARHSSYRNPN VCTFSNRNKT WERKVRADTE 480 QQCPKHELDI DDGLGKSSRV LIGSISVAIE DGSEHSQEFR DPKHDSASPS SKITNNSVTE 540 MMGPLRHEES RNNGNITPAV EKHLSSSVMT YDSSYSTRCN ADLAGCGRLQ CTTFSSEEAT 600 AFLSRRWKDA VAGDHVKLVL CPEK

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence Send to blast

MGRDGFVKNQ EIAATSPPAA VHPPAVPGRP AGSLRCCCSS PAVRQRLRYS KSVRPLSLIQ  60
TAARTPSCSK ALTIAAARTR HACCRPAAPF QTSELEMNAS KRYNHITDKD NAETARDIMT  120
TSGQIQPLKI PDAVVALAQA AAKANGWPLF SPPKLQLDKC TKCSREFCSS INFRRHTRVH  180
RRTLKLDKDF PKNRDHIAAF WDKLTVDEAK TILSFLDVAI EDLIQTKASL HLHVSSNELF  240
SVLDEASENT FLCTNTTAYI QKFLFEGEAD KVATELKNVV ACASYMLEKK LVEAWSADKA  300
AEALRCQKLL VEEEEAAQKR QAELMERKRM KKLRQKEQRS KDPKDEEVSV HLSEIVIVAS  360
GSPKIQSLKA VSDPGLYEQE DSQHPQFEAQ DDNGFNVGRS VEGTSCDSGH EMGADVITTQ  420
QVISRHHIGG TENLAQNSFS STTALASKHP ARHSSYRNPN VCTFSNRNKT WERKVRADTE  480
QQCPKHELDI DDGLGKSSRV LIGSISVAIE DGSEHSQEFR DPKHDSASPS SKITNNSVTE  540
MMGPLRHEES RNNGNITPAV EKHLSSSVMT YDSSYSTRCN ADLAGCGRLQ CTTFSSEEAT  600
AFLSRRWKDA VAGDHVKLVL CPEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	325	332	ERKRMKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462846234

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680015.1	0.0	uncharacterized protein LOC101770765
TrEMBL	A0A368PYV3	0.0	A0A368PYV3_SETIT; Uncharacterized protein
STRING	Si029321m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8503	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	2e-63	C2H2-like zinc finger protein