PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462846097
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TALE
Protein Properties Length: 153aa    MW: 17724.9 Da    PI: 9.7027
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462846097genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.35.4e-08921252154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp+++++++L +++gL+ +q+ +WF N+R +
  462846097  92 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 125
                569*****************************87 PP
2ELK26.71.3e-094667122
        ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
               ELK +L+++Y+++L+++++E++
  462846097 46 ELKSELKQGYKEKLVDIREEIL 67
               9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011880.00324667IPR005539ELK domain
PROSITE profilePS512139.834666IPR005539ELK domain
PfamPF037896.2E-64667IPR005539ELK domain
PROSITE profilePS5007111.38666129IPR001356Homeobox domain
SuperFamilySSF466894.28E-1668132IPR009057Homeodomain-like
SMARTSM003892.8E-1068133IPR001356Homeobox domain
CDDcd000861.85E-1069130No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2573130IPR009057Homeodomain-like
PfamPF059202.7E-1886125IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSDDEDNQVD SEANMFDGND GSDGMGFGPL MLTEGERSLV ERVRQELKSE LKQGYKEKLV  60
DIREEILRKR RAGKLPGDTA SVLKAWWQAH SKWPYPTEDD KARLVQETGL QLKQINNWFI  120
NQRKRNWHSN PTSSGEKTKK KRYHNKKICF AAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A7e-1469133872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122141RKRNWHSNPTSSGEKTKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462846097
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685101e-154BT068510.1 Zea mays full-length cDNA clone ZM_BFb0231A20 mRNA, complete cds.
GenBankBT0836591e-154BT083659.1 Zea mays full-length cDNA clone ZM_BFb0026A02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169973.11e-100putative knotted-like transcription factor family protein
SwissprotQ0E3C34e-99KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A0D9VD111e-101A0A0D9VD11_9ORYZ; Uncharacterized protein
STRINGGRMZM2G370332_P021e-104(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.27e-82KNOTTED1-like homeobox gene 3