PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462845857 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bZIP | ||||||||
Protein Properties | Length: 157aa MW: 17419.4 Da PI: 9.9407 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.3 | 3.5e-13 | 29 | 75 | 3 | 49 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 e +r rrk++NRe+ArrsR+RK++ ++ L+ + +L+ +Nk+L l 462845857 29 ENRRKRRKESNRESARRSRLRKQQHLDDLTSQANQLKDQNKQLGAAL 75 5689**************************************98555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.4E-10 | 23 | 75 | No hit | No description |
SMART | SM00338 | 2.4E-13 | 27 | 91 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.5E-10 | 29 | 74 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.76 | 29 | 92 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.76E-10 | 31 | 81 | No hit | No description |
CDD | cd14702 | 6.70E-15 | 32 | 80 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 34 | 49 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MSSGTSSGSS LGTRSSRSED DLDLKAQMEN RRKRRKESNR ESARRSRLRK QQHLDDLTSQ 60 ANQLKDQNKQ LGAALRVTNQ NLVAVQAQNS ILQTQKMELE SRLGSLTEIL LYMNASTTSA 120 AANTTTMNNS ITTINSACDV LGASTWGQPI DLYYQCF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 36 | RKRRKE |
2 | 43 | 49 | RRSRLRK |
3 | 43 | 50 | RRSRLRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462845857 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660520.1 | 1e-64 | PREDICTED: ocs element-binding factor 1-like | ||||
TrEMBL | A0A0A9GYA3 | 1e-77 | A0A0A9GYA3_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ba02250.1.p | 3e-66 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3740 | 32 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 6e-13 | basic leucine-zipper 44 |