PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 311aa MW: 32286.2 Da PI: 6.7818

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462845408	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104	8e-33	140	197	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ 462845408 140 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCSVKKRVERSSNDPSVVITTYEGQHCHH 197 8******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.2E-34	124	198	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-28	131	197	IPR003657	WRKY domain
PROSITE profile	PS50811	29.792	134	199	IPR003657	WRKY domain
SMART	SM00774	4.5E-38	139	198	IPR003657	WRKY domain
Pfam	PF03106	5.0E-26	140	197	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MAGAGGEGGG GGEWPFSADA YADSSAIFAE LGCWAAGLDG ACGELLPPLD PAPEATPPPR 60 ACGGAAEEAV ATPAGSVSVD GGASSSSTDD GAAQEDADVK PAAATEAASK PPAPGKTKGQ 120 KRARQPRFAF MTKSEIDHLE DGYRWRKYGQ KAVKNSPFPR SYYRCTNSKC SVKKRVERSS 180 NDPSVVITTY EGQHCHHTVT FPRAHLHAIA GHMAFSAHHL YDHLPPLQLP PANALDPLTC 240 RPAAMPSSSP SPSSLLRPLH CNQELQAAAS MYPLSATATM AAPAVSTPAS AVPAVDKGLL 300 DDMVPPAMRH A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-26	129	196	7	74	Probable WRKY transcription factor 4
2lex_A	4e-26	129	196	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00067	PBM	Transfer from AT1G69310	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462845408

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU058608	2e-84	KU058608.1 UNVERIFIED: Panicum miliaceum WRKY8-like gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149447.1	1e-110	probable WRKY transcription factor 57
TrEMBL	A0A1E5VGB7	1e-118	A0A1E5VGB7_9POAL; Putative WRKY transcription factor 57
TrEMBL	A0A3B6C5U0	1e-118	A0A3B6C5U0_WHEAT; Uncharacterized protein
TrEMBL	A0A446M9N7	1e-118	A0A446M9N7_TRITD; Uncharacterized protein
STRING	Pavir.Bb00073.1.p	1e-126	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2125	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	2e-53	WRKY DNA-binding protein 57