PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462844418 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 88aa MW: 9650.68 Da PI: 7.5269 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 32 | 80 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f +e Aa+a++ a+++++g 462844418 32 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRYRG 80 79****9888.8*********......44**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.5E-14 | 2 | 88 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
Pfam | PF00847 | 9.5E-10 | 32 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-18 | 32 | 88 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.07E-15 | 32 | 88 | No hit | No description |
SMART | SM00380 | 1.5E-20 | 33 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-22 | 33 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.852 | 33 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 70 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MLFLDAMADS SQESSAGEMA AAPPRQSSST TSRYKGVVPQ PNGRWGAQIY ERHARVWLGT 60 FPDEEAAARA YDVAALRYRG REAATNFP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462844418 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC211606 | 2e-65 | AC211606.1 Oryza glaberrima clone OG_BBa0048H17, complete sequence. | |||
GenBank | CP012609 | 2e-65 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818627.1 | 9e-33 | AP2/ERF and B3 domain-containing protein Os01g0141000-like | ||||
Swissprot | Q9LS06 | 6e-28 | RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14 | ||||
TrEMBL | A0A3B6FIV4 | 9e-32 | A0A3B6FIV4_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_7940.1 | 1e-33 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18707 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 7e-20 | ethylene response DNA binding factor 3 |