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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
448754 |
Common Name | SELMODRAFT_448754 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family |
Trihelix |
Protein Properties |
Length: 399aa MW: 43064.9 Da PI: 6.5492 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
448754 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 38.1 | 4e-12 | 162 | 238 | 2 | 70 |
trihelix 2 WtkqevlaLiearr........emeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
W ++e+ Li+++r m + + ++W++++kkm++ g++r k C+ +w+nl + yk + + ++k
448754 162 WGDDETASLIDFKRedhlgkigAMRG-----SeemtlTATNRWKRIAKKMQAAGMQRDWKVCQTRWNNLCNNYKCVYNFQRK 238
*************9544433322222.....134555899**********************************88777766 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MVRVWGSGIQ RGGAARGVRS NRGGGAFGAG GRAPGPAVAR GGRLPQGRGH GDADLSNFGL 60 NQGGVGAGAQ GAIARGVGAR GAVAQGVGAS PPTASRTQLF SEFSSTTTNE FWFHNLEEQD 120 VAVEQEVEED DRGDEEEGDD DEEGEAGVHV VKKVRKKRRK NWGDDETASL IDFKREDHLG 180 KIGAMRGSEE MTLTATNRWK RIAKKMQAAG MQRDWKVCQT RWNNLCNNYK CVYNFQRKTG 240 NPDYFNEDAK RLMLVKLNLK VFPVEYFNIM DEFLAKQAST SPTFLADSDA PEEEAYEEDP 300 ADGVDPPGDA TQVPGSSGKR KNPKKAEKRM TTLLAEGNAL AAARNEQNLA WQKESIVCMK 360 ENSLAEKEKA ATATVLAGAI SNLASSIFNF LNGATSRS*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 151 | 159 | KKVRKKRRK |
2 | 155 | 159 | KKRRK |