PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 444702 | ||||||||
Common Name | RR4-1, SELMODRAFT_444702 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ARR-B | ||||||||
Protein Properties | Length: 471aa MW: 51017.8 Da PI: 4.9921 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.6 | 1.2e-27 | 185 | 238 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH+ Fv+av+qL G ekA+Pk+ile+m+v+gLt+e+v+SHLQkYRl 444702 185 KARVVWSGDLHRLFVKAVNQL-GVEKAVPKRILEIMSVQGLTRENVASHLQKYRL 238 68*******************.********************************8 PP | |||||||
2 | Response_reg | 83.9 | 4.9e-28 | 17 | 125 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+pl + ll+++l + +y +v++++ + eal+ll+ek+ +Dl++ D+ mp+mdG++ll+ i e +lp+i+++++ge + + e + Ga 444702 17 VLVVDDDPLCLLLLKKMLLQCKY-HVTACSRAVEALQLLREKKfqFDLVISDVYMPDMDGFKLLELIGLEM-DLPVIMMSGNGETSVVMEGITHGAC 111 89*********************.***************999989**********************6644.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel++ 444702 112 DYLLKPVRIEELRN 125 ************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.7E-42 | 14 | 144 | No hit | No description |
SuperFamily | SSF52172 | 4.84E-37 | 14 | 137 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.4E-33 | 15 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.923 | 16 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.8E-25 | 17 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.15E-25 | 18 | 130 | No hit | No description |
PROSITE profile | PS51294 | 9.855 | 182 | 241 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-18 | 183 | 242 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 184 | 242 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-25 | 185 | 238 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.8E-6 | 187 | 237 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MSDDTTDGEG FPIGMRVLVV DDDPLCLLLL KKMLLQCKYH VTACSRAVEA LQLLREKKFQ 60 FDLVISDVYM PDMDGFKLLE LIGLEMDLPV IMMSGNGETS VVMEGITHGA CDYLLKPVRI 120 EELRNIWQHV VRKRGAKEAA KEESSGEWDD SSEKFPEYTS KKRKDKDADS SGGDDPIEDM 180 SGLKKARVVW SGDLHRLFVK AVNQLGVEKA VPKRILEIMS VQGLTRENVA SHLQKYRLGL 240 KRLSGVDMEP HPIASFQADE SGSFGGSMFV RPAGSSKSSI ARTTSCAGGV FGKGVEQLDP 300 GTLTALKQLQ SSIRGGGGGG SGGAQVLKGP RALKMRQVAF DRNQSGGGGG ALQRTASIEL 360 GNLKMQDEWG SAWSVAPTAN AAAIKEEQRS GGESSFSSSV EEQMDLPDLA SFKAAAPSNQ 420 QPQGLNRITE DSSVELDDFC LPEGSNYFIP PLPPPPFPSL QQQENWSIDF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-20 | 184 | 244 | 4 | 64 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002980853.1 | 0.0 | two-component response regulator ORR24 | ||||
TrEMBL | D8SC74 | 0.0 | D8SC74_SELML; Type B response regulator | ||||
STRING | EFJ18038 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 2e-66 | response regulator 10 |
Link Out ? help Back to Top | |
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Phytozome | 444702 |
Entrez Gene | 9657027 |
Publications ? help Back to Top | |||
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