PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

444199

Common Name

ABI5D-2, SELMODRAFT_428822

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bZIP

Protein Properties

Length: 290aa MW: 31996 Da PI: 5.3834

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
444199	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47	5.6e-15	208	250	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r+rr++kNRe+A rsR+RK+a+++eLe +v L++eN++Lk 444199 208 RRQRRMIKNRESAARSRARKQAYTAELEAEVTLLKEENDKLKR 250 79**************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-15	204	268	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.22	206	251	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.8E-12	208	251	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.25E-12	208	264	No hit	No description
CDD	cd14707	8.85E-25	208	260	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.2E-14	208	253	No hit	No description
PROSITE pattern	PS00036	0	211	226	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MGAVSAEYLN SSPVRPVLDD LKSFGVPEKK LSSMNIDELL VAATGEEESQ PSLPSSSEQE 60 EEENPSSSEI KLSVEEVWRE IQEGKLTSTA AASSTGAPES GIAPQRTLGE MTLEEFLVKS 120 GVADSAPTGI VSTFPDLGPA PHKRERDDLE LAYMQGMDPS AANSSSKRLR AFVTKIEECC 180 MVPSGGQVLS YGDAFHKPDE YVDKVAERRQ RRMIKNRESA ARSRARKQAY TAELEAEVTL 240 LKEENDKLKR QQAEDARYRA KVIDMLTVLK RSKKNAKARR VELRRVNSF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024540142.1	0.0	bZIP transcription factor 46
TrEMBL	D8T444	0.0	D8T444_SELML; Uncharacterized protein ABI5D-2
STRING	EFJ08641	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP10063	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	2e-22	bZIP family protein

Link Out ? help Back to Top
Phytozome	444199
Entrez Gene	9631191

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]