PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 442185
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family NF-YB
Protein Properties Length: 122aa    MW: 13411.1 Da    PI: 5.2374
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
442185genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1711.3e-5326114189
   NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
             v+eq+rflPianvsrimkkvlP+nakiskdaketvqecvsefisf+t+easdkc+rekrktingddllwa++tlGfedy++plk+yl++
  442185  26 VKEQERFLPIANVSRIMKKVLPGNAKISKDAKETVQECVSEFISFITGEASDKCKREKRKTINGDDLLWAMGTLGFEDYIDPLKLYLQR 114
             589************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.8E-4924114IPR009072Histone-fold
SuperFamilySSF471131.46E-3629114IPR009072Histone-fold
PfamPF008082.3E-283296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.6E-176078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.6E-177997No hitNo description
PRINTSPR006151.6E-1798116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MADYPGTPES SPHSDNESGG GNYSSVKEQE RFLPIANVSR IMKKVLPGNA KISKDAKETV  60
QECVSEFISF ITGEASDKCK REKRKTINGD DLLWAMGTLG FEDYIDPLKL YLQRGYAISS  120
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A3e-4721114194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0199001e-167Selaginella moellendorffii CCAAT-box binding factor HAP3-like protein (HAP3B1) mRNA, partial cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002973728.12e-81nuclear transcription factor Y subunit B-3
RefseqXP_002975778.12e-81nuclear transcription factor Y subunit B-1
SwissprotQ69J405e-61NFYBA_ORYSJ; Nuclear transcription factor Y subunit B-10
TrEMBLD8RRF44e-80D8RRF4_SELML; CCAAT-box binding factor HAP3-like protein
TrEMBLD8RXB74e-80D8RXB7_SELML; CCAAT-box binding factor HAP3-like protein
STRINGEFJ234076e-81(Selaginella moellendorffii)
STRINGEFJ253886e-81(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-61nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]