PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 441325
Common NameSELMODRAFT_441325
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 716aa    MW: 79759.1 Da    PI: 5.4279
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
441325genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-07106129226
              -S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
              ++ +C ff + G+C  GdrC+F Hg
   441325 106 GRTPCYFFIQ-GYCAKGDRCPFLHG 129
              7899**9999.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00413260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6573261IPR000571Zinc finger, CCCH-type
PfamPF156632.9E-123387No hitNo description
PROSITE profilePS5010310.5776389IPR000571Zinc finger, CCCH-type
SMARTSM003561.66588IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-6104129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.417104131IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5105130IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-5106129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-5109130IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MATANGDAST LAAAAAAAPG AIAPASAEDV ALKKNTDCVY FLASPLTCKK GEECEFRHSE  60
AARINPRDCW YWVSGSCLNR DCPFRHPPLE AGNPTPGQQQ PASNKGRTPC YFFIQGYCAK  120
GDRCPFLHGV PKPTTTAPPE LEVPPRSEAA IPSKPSLTAQ KPSVDIQLQA IAAVPEARPA  180
PPSQVAKPAG VFQVAKPAAA ATQVAKPAAS QVAKPAPPTQ IAKPVVKPSP PAQVAKPAPS  240
HVDRSTGYTP AENVDRYTRE STGYTPAENG NGVAGRSRSV AAEPEESAEP VSSTHEDDDL  300
LMTTSRAENG TRDPEERWEE SSPGFDVLVD DGPEESEFLH GNNDEAGDRF DDDYEFQYSE  360
MYNQTGGFES GPPLYERESY DRIRHENGRF EQGEYTDYDA PYDRMDFDRP PLLDNPERDY  420
FRQTRQVRTQ SIKERLRFNH QDPRPFLDNG DLRNVLERRR RLDVYPGREG DDRFPREFTD  480
RERHRDDFSR GRERDRAQNY FHQARLNSSS GRRSSRERSN ERFHHRHPPP DAFMYRGGGQ  540
IDRRPVKDAS PPGYEARNFG QGFSRRTGGE EPSDFAAPKS LAQIRAEKRK LDGEEVAMVS  600
SSKRSYISRE SRFHGGELNG GGDDGDQHFE GPKPLHEILK DKRREEFSQL RRHDESVIVA  660
SGEREERDSR ANGVANHHVH ADKITTTTVT AREESDDDED DDDDDFAKKL GGYFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002970784.10.0zinc finger CCCH domain-containing protein 32
TrEMBLD8RIL40.0D8RIL4_SELML; Uncharacterized protein
STRINGEFJ281100.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24551220
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]