PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 440762
Common NameSELMODRAFT_440762
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C2H2
Protein Properties Length: 1530aa    MW: 167287 Da    PI: 5.9859
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
440762genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009214431466223
               EET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
               kC+   Cgk+F ++ +L++H r+H
   440762 1443 KCTfkGCGKRFFSHKYLVQHRRVH 1466
               688889****************99 PP
2zf-C2H216.32.7e-0515021526123
               EEETTTTEEESSHHHHHHHHHH..T CS
  zf-C2H2    1 ykCpdCgksFsrksnLkrHirt..H 23  
               y+Cp C+k+F+  s++ rH r+  H
   440762 1502 YSCPECDKTFRFVSDFSRHKRNtgH 1526
               99******************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.0E-161556IPR003349JmjN domain
PROSITE profilePS5118314.9641657IPR003349JmjN domain
PfamPF023754.6E-151750IPR003349JmjN domain
SuperFamilySSF511975.22E-27146212No hitNo description
PROSITE profilePS5118434.362224393IPR003347JmjC domain
SMARTSM005584.9E-44224393IPR003347JmjC domain
SuperFamilySSF511975.22E-27242391No hitNo description
PfamPF023731.5E-35257376IPR003347JmjC domain
SMARTSM003551414191441IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.40114421471IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-614421465IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01414421466IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.78E-714421479No hitNo description
PROSITE patternPS00028014441466IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-614661481IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.4E-1214711522No hitNo description
PROSITE profilePS5015711.65514721501IPR007087Zinc finger, C2H2
SMARTSM003550.002814721496IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014741496IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-714821502IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.34415021529IPR007087Zinc finger, C2H2
SMARTSM003550.05215021526IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.3E-815031522IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028015041526IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1530 aa     Download sequence    Send to blast
MVGVDVAPWL ASLPLAPEFH PSEEEFVDPI AYILKIEQEA SHYGICKIVP PYSRAPENTV  60
LSNLNASLAA TQDATTAAAT APGSCSIHAA TPLARSMCSA VGGEGDARVV MPQSVDSTAK  120
FTTRRQQLGW NPRRPRGGSQ YRAQKQVWES GEYYTLEQFE DKAKAFSSTT LGPGCDDLSP  180
LAVETLFWNA EFSKPISIEY ANDIPGSAFL DSGAGAFQGE DGRELAGSGW NIRNIARSHG  240
SLLKCMPDEV PGVTTPMVYL GMLFSWFAWH VEDHELHSLN YLHTGARKTW YAVPSDAACA  300
LEEVIRLYGY GSRLKPRAAF TLLGEKTTVL SPEVLVAAGV PCCRLVQNPG EYVITFPRAY  360
HLGFSHGFNC GEAANFATPA WLEVAREAAA RRASMSHLPM LSHEQLLYLF TMSLAKSPSS  420
PQLQLSTFKV ESAVKTAFVN EVKQNNTVIA KLLEFGVEGC VFLRECKTPG TRPQATAAET  480
MIASQACETE TQQTSHSDTG SLHAEKNNDK PFSVESKSFS PDRYGNANEA SRIAPLPTPW  540
GALPCAACGI LCFASMALVQ PTATPTFSYR QRKQPQKCRT SQAGVLPPSS LVDVSDIPKV  600
DTGSIQKKLS HFSGICQLNS AHEEPDAGDC DMLPELSSLS DDNIPDSEAL QKLLKVRTRL  660
TRPSLELLAE MYKDDLKEDI EQCGPDVPPD AVISTDEVGT SVDAPWLVLR DEPCVADSDQ  720
ELQNQAVVEA GAGRSLSAIF VSKGLWFGEE PTKDLDILDN ASATATNVTE CDSHRETEIP  780
VVQAPVCSFN CESNNIFSTN ELDEDCSAVE VDAANPILSC SNNEADVDKT IGAWKFYRGS  840
ARPYVLCLEH AVEAVTKLQP LGGATVLVIC HPNYGSIQRK AEELGQGMHA IFNWQQIPLR  900
EASEAEVEIV NKAIHLKIDN SLGWNWCAKM GIGSRRNRKG TAGIVSSEVR LEQEDRKTEA  960
EAESEIPLTT KPEAEKKMIW CGRQWKASQV HPLLGGGKSA AHLLSQVLRI QKRLQPAMKI  1020
RNSFPGLSSQ PLKKLRKDGW EQQERVMTAA ILRKSKRNAV AREGRKKRLK FDGLQARLQQ  1080
AQHGVCKQAV FSLECNSSEN QQNDQDSTKN HGGTNVQGWL LTTCETSFNP ASSSTGCQRN  1140
SDFDSAELVK WHDVPVSCSP SLGPPMQAYE WSSDISPNGI CSTSQQDTGF DEMQEWDQRP  1200
ADRARKLVAR LKRRSGDSQM LVLSKKARIE CVENSDELNS LMEDIPDSVS GLIATDAYAD  1260
ESEEDGKDDE VVVDESASDI DEYFLRSGSA SDTSPPKALP CFAASRKRSS SKSRVKRATW  1320
ENLLNRLAAP AEEVALIQNQ DSFPLSCVTE TGWEGIECGT YRSKKSETPQ GGKKRGGGGK  1380
RAKAAGAAAA TTTAAAGNGG GGNVGVVAAD EMDDANNPFP CDVEGCTMSF NSEQELAQHK  1440
KNKCTFKGCG KRFFSHKYLV QHRRVHMDER PLKCPWQGCT MSFKWAWART EHIRVHTGER  1500
PYSCPECDKT FRFVSDFSRH KRNTGHARA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A7e-7254574398Transcription factor jumonji (Jmj) family protein
6ip4_A7e-7254574398Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110521068RKSKRNAVAREGRKKRL
213701378GGKKRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002969518.10.0lysine-specific demethylase JMJ705
TrEMBLD8RE620.0D8RE62_SELML; Uncharacterized protein
STRINGEFJ296060.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP44011217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-135C2H2 family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]