PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 440669
Common NameSELMODRAFT_440669
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Trihelix
Protein Properties Length: 352aa    MW: 36802.4 Da    PI: 4.6146
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
440669genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix26.81.3e-0872156286
  trihelix   2 WtkqevlaLiearremee.rlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               W+   v  Li+  ++++  +l+ g+l+ ++W+e+++ + +  + +   kqCk+k + l + ykk k ++++  +++  t+++fd+++
    440669  72 WPTAVVNSLIDQFEDIKViKLNMGNLRSQHWREIADTLnSTFQTSYDWKQCKNKVDLLIRLYKKSKLRMIQ--ADVPPTWRFFDRMD 156
               88899999998888776438899***************4445677899**********************9..689999*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-1171158No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGEAVIAAPG GESTTVSDEH EQQLGGDAGA AAADELGHNG SAAAAGAAPG GGGVGGGASG  60
GGGGGGGGGD LWPTAVVNSL IDQFEDIKVI KLNMGNLRSQ HWREIADTLN STFQTSYDWK  120
QCKNKVDLLI RLYKKSKLRM IQADVPPTWR FFDRMDSILG RTFKLSSAAL ATGNSNSKRI  180
AAAIHSNNAD AATTARNCSS PTNLDPDDDD DDDDDEPPGH GGACGGTDGG DAGEEGGGDE  240
DDEQQHTTVS SPRTTSERAD EIDFRAVAAA ASVRKKSKKS GRSSTSSAIN LLVGALNHYT  300
QAFERCKQLE VEAQLKMSQE SRAFQLQIAE MQLEVTKEIV RVIVTPKLEL L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024529770.10.0trihelix transcription factor ASIL1
TrEMBLD8RDE50.0D8RDE5_SELML; Uncharacterized protein
STRINGEFJ302960.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-14sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]