PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

439314

Common Name

SELMODRAFT_439314

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bZIP

Protein Properties

Length: 414aa MW: 46380.4 Da PI: 10.0175

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
439314	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.2	1.6e-07	214	272	1	59
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 eke++r rr + NRe+Ar +RK++ +ee + k+ eL++ N++ +ke+e +++e +l 439314 214 EKEIRRLRRIEANRESARQTIRRKQKMCEEMTLKANELSSANDRCRKEIEAIREENRRL 272 89***************************************************998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-7	211	272	No hit	No description
SMART	SM00338	7.7E-6	214	278	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.266	216	272	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.46E-5	217	273	No hit	No description
CDD	cd14702	4.20E-12	219	270	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MKSKGRGKPR KRAKAEDVAD LVKTEIDAAE ALAEFSKQVV VARDDDSGMK LQWQRKRKRS 60 TKYGMESSSS SMLVASNSAV DFPLVKDEYP SDSDKERGGG SLPLVTYNRF DTSEDSLEPG 120 FRAESPSSPL PPLGTEGYSA YVKSEAGLVQ QCAFKSSLEF EEKPKAISWS KLRGMKQPKL 180 EDGRSSFHAK DRRMSSTLGC GKGRSARAVL TEEEKEIRRL RRIEANRESA RQTIRRKQKM 240 CEEMTLKANE LSSANDRCRK EIEAIREENR RLYEAGCSLR KQLADKYIEL GASFPVLPTL 300 EDESKCAKKP DGFKEAITET VQVNRQDDNI ELVESQTSHS TAAVARTNQT AAPLLTVERY 360 TTMVPPRFYS FPYSFYTGRK DALAAATAAQ ARRRRKELTR SKNLLARQVS LNS*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MKSKGRGKPR KRAKAEDVAD LVKTEIDAAE ALAEFSKQVV VARDDDSGMK LQWQRKRKRS  60
TKYGMESSSS SMLVASNSAV DFPLVKDEYP SDSDKERGGG SLPLVTYNRF DTSEDSLEPG  120
FRAESPSSPL PPLGTEGYSA YVKSEAGLVQ QCAFKSSLEF EEKPKAISWS KLRGMKQPKL  180
EDGRSSFHAK DRRMSSTLGC GKGRSARAVL TEEEKEIRRL RRIEANRESA RQTIRRKQKM  240
CEEMTLKANE LSSANDRCRK EIEAIREENR RLYEAGCSLR KQLADKYIEL GASFPVLPTL  300
EDESKCAKKP DGFKEAITET VQVNRQDDNI ELVESQTSHS TAAVARTNQT AAPLLTVERY  360
TTMVPPRFYS FPYSFYTGRK DALAAATAAQ ARRRRKELTR SKNLLARQVS LNS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	391	396	RRRRKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002965529.1	0.0	uncharacterized protein LOC9635675
TrEMBL	D8R3I4	0.0	D8R3I4_SELML; Uncharacterized protein
STRING	EFJ32949	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4569	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19490.1	2e-09	bZIP family protein

Link Out ? help Back to Top
Phytozome	439314
Entrez Gene	9635675

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]