PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

438474

Common Name

SELMODRAFT_438474

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 862aa MW: 94911.8 Da PI: 5.9324

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
438474	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	39.6	1.1e-12	50	92	8	48
zf-Dof 8 cpr.Cdstn.tkfCyynnyslsqPryfCkaCrryWtkGGalrn 48 cp Cds+ tkf y+ n+ l qPry C C+r++t GG++r 438474 50 CPHgCDSSAlTKFDYFENHMLIQPRYKCTVCKRHFTLGGTIRA 92 5544987544*******************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-6	44	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-12	48	92	IPR003851	Zinc finger, Dof-type
SuperFamily	SSF103481	2.48E-5	387	473	No hit	No description
Gene3D	G3DSA:1.20.5.1030	5.7E-4	804	857	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009535	Cellular Component	chloroplast thylakoid membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence Send to blast
MTEMRDVLVK DIHHLQNYPV FGSQTSQQAF VTFGSVGELM AFLRQQHPLC PHGCDSSALT 60 KFDYFENHML IQPRYKCTVC KRHFTLGGTI RAKRAKKEDG GRPRKRPKKE QQQNKSRGQC 120 LPREMLPSPM IPSAATSGSR GCASPRRASR GASRRTARPS PSTTGQCPSQ LVVRDQSLPV 180 NACDLEGYVQ DEEIFQEVEK LWCKMDLEDK GPSVEDEEKN FLKDFNVDDG DDLDLLLGLE 240 EFSREFSDQQ GQGTRFDLGE EQNNFAMELV RQMEEELPIP VVDEENDFAM ELEREIEEAS 300 MKAKEQAMLV WKDEVSKIRN QDNLTFTTNH IGFGGFAYAA GAAIGHSCID ASRKWASQRF 360 SDRELVALVA LLDALLLSSM ALLSGGFDLF SLTRLDTEYV AALLVTAAIK ALVGFMYQRA 420 LHVSPLSVTV PYLAFTPVLL VFTSYVIINE LPSSQGLMGI VVVTLGGYFL ALDHPAEVEV 480 KKSDEPPGKI VSVLPLLPWN SSKACDKVPK FSTDGDGVVL DLSEKNSPPV AIPGGNSSWW 540 PQIQWEEGTL LMLGVAALLS ISNSLDKMAG HLAPSLLNFA ALQRGFTAVP VVLYLLVTSP 600 KSFSLLIHFF PVLLAISLFE VVAFICYLKS LEILLVSYAV AAKRSNVLLS VLIGRVVFKV 660 ANGKDMEAIA IHFDDGWRND AYFAGLKRIS LVMGALGWTR AHFLPPLPPS PSRHKNSLFL 720 VNGRNAPARR SRLRSQSSSK QESGAEESAR IAPLDLPVQE GSQESQDSSA QGELQQARGQ 780 QEQQEIGEAL RKLRKQAAPS PSSVGFWEGL AQEIGMIEWP NPGKVFGTTV VVLSIIFASS 840 IVLLTVNFLL AELSDVVFKT Q*

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence Send to blast

MTEMRDVLVK DIHHLQNYPV FGSQTSQQAF VTFGSVGELM AFLRQQHPLC PHGCDSSALT  60
KFDYFENHML IQPRYKCTVC KRHFTLGGTI RAKRAKKEDG GRPRKRPKKE QQQNKSRGQC  120
LPREMLPSPM IPSAATSGSR GCASPRRASR GASRRTARPS PSTTGQCPSQ LVVRDQSLPV  180
NACDLEGYVQ DEEIFQEVEK LWCKMDLEDK GPSVEDEEKN FLKDFNVDDG DDLDLLLGLE  240
EFSREFSDQQ GQGTRFDLGE EQNNFAMELV RQMEEELPIP VVDEENDFAM ELEREIEEAS  300
MKAKEQAMLV WKDEVSKIRN QDNLTFTTNH IGFGGFAYAA GAAIGHSCID ASRKWASQRF  360
SDRELVALVA LLDALLLSSM ALLSGGFDLF SLTRLDTEYV AALLVTAAIK ALVGFMYQRA  420
LHVSPLSVTV PYLAFTPVLL VFTSYVIINE LPSSQGLMGI VVVTLGGYFL ALDHPAEVEV  480
KKSDEPPGKI VSVLPLLPWN SSKACDKVPK FSTDGDGVVL DLSEKNSPPV AIPGGNSSWW  540
PQIQWEEGTL LMLGVAALLS ISNSLDKMAG HLAPSLLNFA ALQRGFTAVP VVLYLLVTSP  600
KSFSLLIHFF PVLLAISLFE VVAFICYLKS LEILLVSYAV AAKRSNVLLS VLIGRVVFKV  660
ANGKDMEAIA IHFDDGWRND AYFAGLKRIS LVMGALGWTR AHFLPPLPPS PSRHKNSLFL  720
VNGRNAPARR SRLRSQSSSK QESGAEESAR IAPLDLPVQE GSQESQDSSA QGELQQARGQ  780
QEQQEIGEAL RKLRKQAAPS PSSVGFWEGL AQEIGMIEWP NPGKVFGTTV VVLSIIFASS  840
IVLLTVNFLL AELSDVVFKT Q*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	106	KRAKKEDGGRPRKRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8QYC9	0.0	D8QYC9_SELML; Uncharacterized protein
STRING	EFJ35179	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	3e-09	Dof family protein

Link Out ? help Back to Top
Phytozome	438474
Entrez Gene	9643518

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]