PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

438143

Common Name

SELMODRAFT_438143

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NF-YA

Protein Properties

Length: 290aa MW: 30891.9 Da PI: 7.4996

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
438143	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105	6.6e-33	137	193	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e++l +k+rkpylheSRh hAlrR+Rg+gGrF 438143 137 EEPVYVNAKQYHGILRRRQSRAKAESENRL-IKTRKPYLHESRHLHALRRARGCGGRF 193 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.3E-37	135	196	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	39.213	136	196	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.3E-27	138	193	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	9.0E-24	139	161	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	141	161	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	9.0E-24	170	193	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MQSGDSDGQL AAAAAAAAAA GSSSAPGVPW WGGVCHLPQQ PSAAPDKQVV ASAAHNSTTG 60 YDENGGDEPQ HQQAQQNPAL AGLPPPPGEY VQAAYPYSDP FFGGMMAAAY AGQGLVQPHV 120 LGLQQARMPL PTEILEEEPV YVNAKQYHGI LRRRQSRAKA ESENRLIKTR KPYLHESRHL 180 HALRRARGCG GRFLNKKTNK DNETETTTTN VTSNTSTGSR NRNTTNINAP SNRSESLSSG 240 NLEASNPYHH VMAFSNGHHS LQQDSQLFHA SAFHPISGDE GVQAVAAMQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-20	137	199	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024515173.1	1e-135	nuclear transcription factor Y subunit A-7
TrEMBL	D8QUD4	0.0	D8QUD4_SELML; Uncharacterized protein
STRING	EFJ35850	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-38	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	438143
Entrez Gene	9660750

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]