PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

438136

Common Name

SELMODRAFT_438136

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 1268aa MW: 141899 Da PI: 6.3989

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
438136	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	1074	1099	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C++sF++ s+L H r+ + 438136 1074 HTCDfdGCTMSFRTASELALHKRNiC 1099 789999****************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00545	1.1E-11	15	55	IPR003349	JmjN domain
PROSITE profile	PS51183	12.732	16	57	IPR003349	JmjN domain
Pfam	PF02375	8.2E-11	17	50	IPR003349	JmjN domain
SuperFamily	SSF51197	1.02E-13	195	362	No hit	No description
PROSITE profile	PS51184	27.718	195	348	IPR003347	JmjC domain
SMART	SM00558	1.8E-30	198	348	IPR003347	JmjC domain
Pfam	PF02373	1.2E-23	229	328	IPR003347	JmjC domain
Gene3D	G3DSA:3.30.160.60	7.7E-4	1074	1096	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	14	1074	1096	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.739	1097	1126	IPR007087	Zinc finger, C2H2
SMART	SM00355	5.7	1097	1121	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	1099	1121	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.8E-4	1102	1127	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.95E-17	1110	1166	No hit	No description
PROSITE profile	PS50157	12.653	1127	1156	IPR007087	Zinc finger, C2H2
SMART	SM00355	8.7E-4	1127	1151	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-11	1128	1154	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	1129	1151	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.1E-4	1155	1167	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1268 aa Download sequence Send to blast
MVEVEVAPWI KGLPVAPEYR PSEAEFVDPI SFVLRIEEEA GQFGICKIVP PTVKPRRKSL 60 LPNLYRSIAA AGKSSGKKAS IGLDANSLAG SKFTTRKQEL GDHTHAQTRH SKGASYTLDQ 120 FEIKAKAFTR AQVGTSRDVV PVVLEALFWK TIEEDKPVTV EYADYIPGSA FPESDSEQGD 180 GKKRKKSAVD REGWKLVNSP WNMRYLAKLQ GSLLRFMPGE VQGVTSPLLY IAMLFSHWSW 240 RTESHDLHFV DYLHLGAPKT WYVVPPGAAP AFEDVLRNQD DNSVVSPEVL VINGVPCCRL 300 VQNPGEYVIV FPRAYNFSFS HSFNCGETSS LASPGWLKAA KQAAARKELL CRPPMVCHEK 360 LLYQTALAFA KSSNAQDVRS SRLKHKMKVG AEEAVRTEFV NDMAKNQQVL DKLVSMTQAR 420 RVILKGDDGK ESLSNLVNLG TIDSISLLSF VCETMEGADE KVGDDKTLGK NSPPRIDWGN 480 VCCSICGILC YSCVVIVQPT SKASESIREG RLTVTDENHG QEDENGSSRK VLLPNGSRKA 540 GRDNLQRPYI MCSEHALQVS LLLQGCGGSL VLVVYHPEYE MFDKNAKDFA MDMSIRCRFR 600 DTTYDEENQQ DLQLISAAIE AAERPDNGWI DHVQARLPAT ASFLENSRAE TDEDDTELVV 660 EKTSKEKKVV GRWCGRVWRH DQTHAILGGC RTASKVEDNQ DELADSKTGK SKGGHDEDIL 720 KSEDYASLRK NCRKRKRTQM VAVWRVESEP QPCSTQISES LPSELEANDV KTENAASLDE 780 DVKVSEPELR TENRSSEEVR PLPPLVCKEE KEENGKLELP CPEETTKPLV IVDCKEEPEI 840 HREAVVLDEE APQENVAAYK EVLPAPLEEP EQKSKEKEPE PVAAENEPVS VVITEDDGQH 900 GAGSTLCFSN SVWHDVPISF SPTFHSSYMD EKPKAWPTAH RTPLKIGIPK RKRTQIASSL 960 EASDEEKQLT DEDLEEDYDE EEEEEDEEEQ NYSNVSASSV EDDERAVDEA AEYGLESRAK 1020 RTKRKSWKAQ AAEEQEKAPR RGGAKKASTS TKRPGSEATK RKLAPGMVHS HGLHTCDFDG 1080 CTMSFRTASE LALHKRNICT IKECSKRLCS HSYLMQHYRV HADDRPLKCP WKGCKKTFKW 1140 SWARTEHIRV HTGERPYACT ECGKSYRARK GKAGMQQAGK ESRISRPSDS QTRNLKALME 1200 KGWMTPVLGT RTGTVRLRLR EDLSGRFDEL EHAWNGTGTG LGKAWILVNR HTGLEGWKVL 1260 WRLKFGF*

Sequence ? help Back to Top

Protein Sequence Length: 1268 aa Download sequence Send to blast

MVEVEVAPWI KGLPVAPEYR PSEAEFVDPI SFVLRIEEEA GQFGICKIVP PTVKPRRKSL  60
LPNLYRSIAA AGKSSGKKAS IGLDANSLAG SKFTTRKQEL GDHTHAQTRH SKGASYTLDQ  120
FEIKAKAFTR AQVGTSRDVV PVVLEALFWK TIEEDKPVTV EYADYIPGSA FPESDSEQGD  180
GKKRKKSAVD REGWKLVNSP WNMRYLAKLQ GSLLRFMPGE VQGVTSPLLY IAMLFSHWSW  240
RTESHDLHFV DYLHLGAPKT WYVVPPGAAP AFEDVLRNQD DNSVVSPEVL VINGVPCCRL  300
VQNPGEYVIV FPRAYNFSFS HSFNCGETSS LASPGWLKAA KQAAARKELL CRPPMVCHEK  360
LLYQTALAFA KSSNAQDVRS SRLKHKMKVG AEEAVRTEFV NDMAKNQQVL DKLVSMTQAR  420
RVILKGDDGK ESLSNLVNLG TIDSISLLSF VCETMEGADE KVGDDKTLGK NSPPRIDWGN  480
VCCSICGILC YSCVVIVQPT SKASESIREG RLTVTDENHG QEDENGSSRK VLLPNGSRKA  540
GRDNLQRPYI MCSEHALQVS LLLQGCGGSL VLVVYHPEYE MFDKNAKDFA MDMSIRCRFR  600
DTTYDEENQQ DLQLISAAIE AAERPDNGWI DHVQARLPAT ASFLENSRAE TDEDDTELVV  660
EKTSKEKKVV GRWCGRVWRH DQTHAILGGC RTASKVEDNQ DELADSKTGK SKGGHDEDIL  720
KSEDYASLRK NCRKRKRTQM VAVWRVESEP QPCSTQISES LPSELEANDV KTENAASLDE  780
DVKVSEPELR TENRSSEEVR PLPPLVCKEE KEENGKLELP CPEETTKPLV IVDCKEEPEI  840
HREAVVLDEE APQENVAAYK EVLPAPLEEP EQKSKEKEPE PVAAENEPVS VVITEDDGQH  900
GAGSTLCFSN SVWHDVPISF SPTFHSSYMD EKPKAWPTAH RTPLKIGIPK RKRTQIASSL  960
EASDEEKQLT DEDLEEDYDE EEEEEDEEEQ NYSNVSASSV EDDERAVDEA AEYGLESRAK  1020
RTKRKSWKAQ AAEEQEKAPR RGGAKKASTS TKRPGSEATK RKLAPGMVHS HGLHTCDFDG  1080
CTMSFRTASE LALHKRNICT IKECSKRLCS HSYLMQHYRV HADDRPLKCP WKGCKKTFKW  1140
SWARTEHIRV HTGERPYACT ECGKSYRARK GKAGMQQAGK ESRISRPSDS QTRNLKALME  1200
KGWMTPVLGT RTGTVRLRLR EDLSGRFDEL EHAWNGTGTG LGKAWILVNR HTGLEGWKVL  1260
WRLKFGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ip0_A	5e-56	9	401	8	381	Transcription factor jumonji (Jmj) family protein
6ip4_A	5e-56	9	401	8	381	Arabidopsis JMJ13
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	185	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024544679.1	0.0	probable lysine-specific demethylase ELF6
TrEMBL	D8QUC4	0.0	D8QUC4_SELML; Uncharacterized protein
STRING	EFJ36270	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP7506	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	1e-119	C2H2 family protein

Link Out ? help Back to Top
Phytozome	438136
Entrez Gene	9661806

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]