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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 432649 | ||||||||
Common Name | SELMODRAFT_432649 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | Dof | ||||||||
Protein Properties | Length: 220aa MW: 24893.7 Da PI: 10.2594 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 29.1 | 2.1e-09 | 167 | 206 | 4 | 42 |
zf-Dof 4 kalkcprCdst.ntkfCyynnyslsqPryfCkaCrryWtk 42 ++++cp C + t+f +nny qPry Ck C+ Wtk 432649 167 EQIDCPWCGRMwCTRFYDFNNYKPGQPRYHCKPCKLTWTK 206 7899****887369*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 0.002 | 166 | 211 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.2E-8 | 168 | 206 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MKRKAQDAEI PMLDDLEDEV QGDGWEYEGG LACPPWDPEA LKSFCAMDDW CGEPVMARVK 60 PKEPANKPKI SSEPERPATP NKPKRKSSSE PKRPKTSSEP KRPKTPSEPK RPNISSEPKR 120 PKTPSEPKRP KALKSCGGEA KTRKNASAKV TPELRALLAK VRATLPEQID CPWCGRMWCT 180 RFYDFNNYKP GQPRYHCKPC KLTWTKDKVP RPRSKRPAF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 94 | KRKSSSEPKRPK |
2 | 90 | 96 | PKRPKTS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002994749.2 | 1e-147 | neurofilament medium polypeptide | ||||
TrEMBL | D8TGN1 | 1e-154 | D8TGN1_SELML; Uncharacterized protein | ||||
STRING | EFJ04184 | 1e-155 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46590.2 | 3e-07 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | 432649 |
Entrez Gene | 9652956 |
Publications ? help Back to Top | |||
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