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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 429122 | ||||||||
Common Name | SELMODRAFT_429122 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | Dof | ||||||||
Protein Properties | Length: 238aa MW: 26944.7 Da PI: 5.7214 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 53.5 | 5.2e-17 | 52 | 116 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggrrknkk 60 ++ +cprC+s nt+f yynn + qPry C++C+ Wt+G +r+v P Gg +r k+ 429122 52 DNVYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYACRSCKGKWTQGSKVRDVslsPTGGNKRTLKS 116 67889****************86533444*********************977778888887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.3E-25 | 52 | 116 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-8 | 57 | 112 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MARASKRSRE DDGIMVPTKK RRLRSERACK LTAQEVRDQN LYGVWEHHDL PDNVYQCPRC 60 QSYNTRFDYY NNEKSTGKRD QPRYACRSCK GKWTQGSKVR DVSLSPTGGN KRTLKSHGGD 120 KIAPVVQEEF VGESSQVMGD YAAGFDQTIY WEQGYGVGDC AQRLSHEAFD QNSYWELLPG 180 LGQGPVGDCV QEVFAQTSEL GDGVFADQFS DFELYPKRVL ETTGTTEKEN ENKEQEH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024520303.1 | 1e-148 | uncharacterized protein LOC112342540 | ||||
TrEMBL | D8T548 | 1e-178 | D8T548_SELML; Uncharacterized protein | ||||
STRING | EFJ08198 | 1e-179 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 3e-12 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | 429122 |
Entrez Gene | 9658512 |
Publications ? help Back to Top | |||
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