PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

ERF

Protein Properties

Length: 373aa MW: 40324.1 Da PI: 8.1631

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
428344	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.6	8.8e-20	243	293	2	56
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr ++ +grW AeIrd r r++lg+f+t+e+Aa+a++aa++kl+g+ 428344 243 VFRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEDAARAYDAAARKLRGA 293 59*****.******32....25************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.5E-28	242	300	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.983	243	300	IPR001471	AP2/ERF domain
SMART	SM00380	3.2E-32	243	306	IPR001471	AP2/ERF domain
Pfam	PF00847	1.8E-13	243	292	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.3E-21	243	300	IPR016177	DNA-binding domain
CDD	cd00018	5.57E-19	244	301	No hit	No description
PRINTS	PR00367	3.1E-9	244	255	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-9	266	282	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MALHEVLTGI KEEPRSFPSS PMLFDQDHCH DSFDHLLYAG GAAGSSSFNL RPAGRRRHDQ 60 EFCSQLDALA LDHNPCTSPI PSPGHSSNSS LDGIAAVVGQ RILFGGGGGA TADSTSSSSH 120 HHRHHHDHPV TPRYNAAATT NYRCSVPDSS RQDDMDLMVG QEHFSESHGH CFLDDHTFYG 180 SRRGHSELDL DRSLSSKRTS HTTIDSLAAA AAAAGYSLAS SSPDPPNGAA VSAATGAANP 240 GRVFRGVRKR PWGRWSAEIR DRIGRCRHWL GTFDTPEDAA RAYDAAARKL RGAKARTNFA 300 IPSSSGQPII PPAVSHHHHQ QQQQQSKCHG TNILLSSSSS SSGYQHQQHS YDLDLKLKLW 360 NSSNSSSSYR RS*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MALHEVLTGI KEEPRSFPSS PMLFDQDHCH DSFDHLLYAG GAAGSSSFNL RPAGRRRHDQ  60
EFCSQLDALA LDHNPCTSPI PSPGHSSNSS LDGIAAVVGQ RILFGGGGGA TADSTSSSSH  120
HHRHHHDHPV TPRYNAAATT NYRCSVPDSS RQDDMDLMVG QEHFSESHGH CFLDDHTFYG  180
SRRGHSELDL DRSLSSKRTS HTTIDSLAAA AAAAGYSLAS SSPDPPNGAA VSAATGAANP  240
GRVFRGVRKR PWGRWSAEIR DRIGRCRHWL GTFDTPEDAA RAYDAAARKL RGAKARTNFA  300
IPSSSGQPII PPAVSHHHHQ QQQQQSKCHG TNILLSSSSS SSGYQHQQHS YDLDLKLKLW  360
NSSNSSSSYR RS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-16	241	307	3	70	ATERF1
3gcc_A	5e-16	241	307	3	70	ATERF1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002990097.1	0.0	ethylene-responsive transcription factor ABR1
TrEMBL	D8T2J2	0.0	D8T2J2_SELML; Uncharacterized protein
STRING	EFJ09106	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80580.1	4e-17	ERF family protein

Link Out ? help Back to Top
Phytozome	428344
Entrez Gene	9628992

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]