PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 424732 | ||||||||
Common Name | SELMODRAFT_424732 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | B3 | ||||||||
Protein Properties | Length: 193aa MW: 22130.1 Da PI: 9.9883 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58 | 1.8e-18 | 80 | 169 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +k++++s+v+ +l+lp +fa++h k +++++tled++g++ e + ++++ l++GW++F +++L++gD +vF+l++ ++l+v++fr+ 424732 80 VKTMLQSHVSGGFWLSLPLSFAKKHLPK--KDTMITLEDSDGQESESFY--LAYKNG--LSGGWRGFSIDHKLQDGDALVFELME--PTRLKVHIFRA 169 699**********************533..6679********8888888..455544..9**********************976..7778****996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-22 | 73 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.86E-25 | 74 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.69E-29 | 77 | 168 | No hit | No description |
PROSITE profile | PS50863 | 12.012 | 79 | 170 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-22 | 79 | 170 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-17 | 80 | 169 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MVSYEEERRR RVEENKKRLK ELGIAEISKE IAQQTTQRAS KNQDDEPRLP RRSFCSQEDR 60 MAAIEAAEKI QQSLDRPSTV KTMLQSHVSG GFWLSLPLSF AKKHLPKKDT MITLEDSDGQ 120 ESESFYLAYK NGLSGGWRGF SIDHKLQDGD ALVFELMEPT RLKVHIFRAA DYQRIQGKSI 180 TDKAQLAKRS RR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024515368.1 | 1e-117 | B3 domain-containing protein At3g19184 | ||||
Swissprot | Q69V36 | 2e-45 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | D8SQV9 | 1e-139 | D8SQV9_SELML; Uncharacterized protein | ||||
STRING | EFJ13235 | 1e-140 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP995 | 16 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-45 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 424732 |
Entrez Gene | 9640105 |
Publications ? help Back to Top | |||
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