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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 420739 | ||||||||
Common Name | SELMODRAFT_420739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | GRF | ||||||||
Protein Properties | Length: 326aa MW: 36455.8 Da PI: 8.3218 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 67.1 | 2.3e-21 | 157 | 200 | 1 | 43 |
WRC 1 daepgrCrRtDGKkWRCsrrvle.gkklCErHlhrgrsrsrksk 43 d+epgrCrRtDGKkWRC + v++ ++k+CErH+hrgr+rs+ksk 420739 157 DSEPGRCRRTDGKKWRCAKPVVAvDQKYCERHIHRGRNRSKKSK 200 689****************98754******************98 PP | |||||||
2 | QLQ | 55 | 2.4e-19 | 102 | 137 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+ +L++Q+l++Ky++a++PvP+eL+ +i++ 420739 102 PFTASQWLELEHQALIFKYMLARAPVPAELIIPIRR 137 8*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.2E-12 | 101 | 137 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.5E-14 | 102 | 136 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.191 | 102 | 137 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.854 | 157 | 202 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.4E-20 | 159 | 200 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MDLRLNQLYN NSKRSPPPPS SSSPLPLDSY EHHAEAAAAS AAAAAAARFY SSDRPPPTSH 60 RMLDQHTGST FIPMAADYGH FCDTALKQAG AAAGDFHHGH FPFTASQWLE LEHQALIFKY 120 MLARAPVPAE LIIPIRRAFS LSPNTFQVGL CPSNLMDSEP GRCRRTDGKK WRCAKPVVAV 180 DQKYCERHIH RGRNRSKKSK ATLTPTDAQP PQNPSPLPAP VHQHSKVPDF VERPTDKHNE 240 DQRGSCGPRP EQDTDHGHSR KTPEALLRHF FDDWPRASEG REQNPSPHFE EEEPPVVQNT 300 RTSSCFPQPN WHWNMPTKMS ILPTL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002981090.1 | 0.0 | growth-regulating factor 4 | ||||
TrEMBL | D8SCZ0 | 0.0 | D8SCZ0_SELML; Uncharacterized protein | ||||
STRING | EFJ17791 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 2e-31 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | 420739 |
Entrez Gene | 9647186 |
Publications ? help Back to Top | |||
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