PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

420607

Common Name

SELMODRAFT_420607

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

MYB_related

Protein Properties

Length: 452aa MW: 51430.5 Da PI: 5.2878

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
420607	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.8	6.6e-10	8	51	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W Ede+l+ a ++ +++W +I++ ++ ++++kqck rw+ +l 420607 8 WKNTEDEILKVAAMKYAKNQWPRISSLLP-RKSAKQCKARWYEWL 51 9999***********************.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.418	1	55	IPR017930	Myb domain
SMART	SM00717	7.1E-8	4	53	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-8	8	51	IPR001005	SANT/Myb domain
CDD	cd00167	4.56E-9	8	51	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-14	8	60	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.74E-16	31	98	IPR009057	Homeodomain-like
CDD	cd11659	4.87E-22	54	96	No hit	No description
SMART	SM00717	3.8E-6	56	103	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	11.388	56	105	IPR017930	Myb domain
Pfam	PF13921	3.0E-5	60	96	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.2E-9	61	96	IPR009057	Homeodomain-like
Pfam	PF11831	3.8E-20	287	443	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MRIMIKGWKN TEDEILKVAA MKYAKNQWPR ISSLLPRKSA KQCKARWYEW LDLSIKKTEW 60 TCEEDEKLLH LAKLMLTQWR TIAPIVGRPP AQCLERATSR LMIQIDPNPE SKPARPDPVD 120 MDEDEKEMLS EARQTPGRKF KGIDYNEEIP FEKRPPPSFY DVSNEERKRS DIETQLRKQD 180 AARNKIAQSA PSSIMQISKL NDPEAVRKRT KLMLPAPQIS DRELEKVVKM SSSRTIYLER 240 TKGAPLLVAN CDAIMMEAEN RLRETQTPLF GGENPELHPS DFSGVAPKKR EDEFHINEGL 300 ELAADNPKAE KLRQAEARRN LQASLKGLPN AKNLYQITVL GVPTAQEEAD EEMEADMADV 360 IANAQAEEDA QEAAALHRRT TVELIRNTIP RHAEADDPKT LIQKELVALL EHDNAKYPMS 420 DRSGKSPPVI PELEDLDEQE LKEERSERTG C*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MRIMIKGWKN TEDEILKVAA MKYAKNQWPR ISSLLPRKSA KQCKARWYEW LDLSIKKTEW  60
TCEEDEKLLH LAKLMLTQWR TIAPIVGRPP AQCLERATSR LMIQIDPNPE SKPARPDPVD  120
MDEDEKEMLS EARQTPGRKF KGIDYNEEIP FEKRPPPSFY DVSNEERKRS DIETQLRKQD  180
AARNKIAQSA PSSIMQISKL NDPEAVRKRT KLMLPAPQIS DRELEKVVKM SSSRTIYLER  240
TKGAPLLVAN CDAIMMEAEN RLRETQTPLF GGENPELHPS DFSGVAPKKR EDEFHINEGL  300
ELAADNPKAE KLRQAEARRN LQASLKGLPN AKNLYQITVL GVPTAQEEAD EEMEADMADV  360
IANAQAEEDA QEAAALHRRT TVELIRNTIP RHAEADDPKT LIQKELVALL EHDNAKYPMS  420
DRSGKSPPVI PELEDLDEQE LKEERSERTG C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	1e-91	2	426	3	602	Cell division cycle 5-like protein
5xjc_L	1e-91	2	426	3	602	Cell division cycle 5-like protein
5yzg_L	1e-91	2	426	3	602	Cell division cycle 5-like protein
5z56_L	1e-91	2	426	3	602	Cell division cycle 5-like protein
5z57_L	1e-91	2	426	3	602	Cell division cycle 5-like protein
5z58_L	1e-91	2	426	3	602	Cell division cycle 5-like protein
6ff4_L	1e-91	2	426	3	602	Cell division cycle 5-like protein
6ff7_L	1e-91	2	426	3	602	Cell division cycle 5-like protein
6icz_L	1e-91	2	426	3	602	Cell division cycle 5-like protein
6id0_L	1e-91	2	426	3	602	Cell division cycle 5-like protein
6id1_L	1e-91	2	426	3	602	Cell division cycle 5-like protein
6qdv_O	1e-91	2	426	3	602	Cell division cycle 5-like protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002982640.1	0.0	cell division cycle 5-like protein
Swissprot	P92948	1e-142	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	D8SCI8	0.0	D8SCI8_SELML; Uncharacterized protein
STRING	EFJ17860	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3948	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	1e-133	cell division cycle 5

Link Out ? help Back to Top
Phytozome	420607
Entrez Gene	9658354

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]