PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 1046aa MW: 117086 Da PI: 6.4236

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
420183	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.3	7.3e-12	43	125	2	85
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W+ + L+e ++++++++ g+l +++W evs+k+ e g++ + +qC+ k +nl+kryk+++ +++s + ++ + 420183 43 WPFMHAIMLLECFKDVWTKSNMGNLTMAQWTEVSNKVNEfCGISMNEQQCRTKVDNLKKRYKRERMKYAP--TGHTSPWEFYVVM 125 9999999****************************66379*******************9988776..4666678888666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-12	42	127	No hit	No description
Gene3D	G3DSA:3.40.50.300	1.1E-16	796	943	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52540	1.35E-23	796	1039	IPR027417	P-loop containing nucleoside triphosphate hydrolase
CDD	cd00009	4.99E-7	834	930	No hit	No description
Pfam	PF00004	5.6E-7	836	872	IPR003959	ATPase, AAA-type, core
Gene3D	G3DSA:1.10.8.60	6.6E-12	944	1026	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 1046 aa Download sequence Send to blast
MSNAANGDSS HPQQQQQSQC QQQQQQQQQQ QQQRKRKANR DSWPFMHAIM LLECFKDVWT 60 KSNMGNLTMA QWTEVSNKVN EFCGISMNEQ QCRTKVDNLK KRYKRERMKY APTGHTSPWE 120 FYVVMNKLFG NTTKLSAAGA SPISGQPAVG DGCGEDTEGS DEEDVVVLDN GGDLIFNIPA 180 ASLPTTSPQS GNSFGRGGHT LLLEGPGETG LDASPSENSN VVAGQAAETS SYQEFSNAAG 240 LSPRLGSGKK MTRATKRKRD SGVGVAAGDG YGDLLKEVER ERNVDWQRRL AELAKVDKKR 300 AKLLMRSQDG CVGFRNGPVD GALGAQQDGD EFDDLLDFER RREELKCKDL CEAERKVDLA 360 SKALCEAQQE RERLERDVTV AREAFEYRKA VGTGLKLSLK KYFVEKIQPA ERINASLTKF 420 PYYLSDVTRD FLVEALGSCL DQSRRASHLS GLCASSNTIL LNGPQNSEMY QEMLVKAIAH 480 DQGVALLMLD STDLAPQDHG DGYTDAVEAD DDMSKVTGFK YGFRKGDRVV SKRDERQRGR 540 VIAVSESVSG KIGILFDATE DALKLTTRFE DIRRSPPIEW HYAWQATISA LCEISRSAKP 600 LIVYFPELEQ WFERAVPVAW KQEIIDNLQR QLDKVIGNVA LIATFTSDAD EPLSVVKRKS 660 LKSIHNLFAN VVDIFPPKDD LDFWRWKALL LQDGERVTAN KNIQLLQKVQ VLTSHNLVCL 720 EFMEFQICDF LLTYSEYSRR QIDCQNFSFG RQVCSLDRAL LKLRRLKHAQ GPKLVAKDEF 780 EEAVLSTILA PNGTPKFDDV GALEDVKKIL GEHVVVPLLR PEHFAKGALA CPCKGVLLYG 840 PPGTGKTYLT KAVAAQSSAN LFWLRGNSIE YKIDSIFAIQ AGEAMTRFKF EFIYGWDRLM 900 SGIAEPVVVM AATCRPFHLD ESVIQKFPKR STFNNLSSRE KILVVLLAKE EIENGFDFKG 960 VAELTDGYSA NDLKNLTVAA AYRPVREMLE LEKAKRNAFG QPLPQELRPL TTQDFVSTLE 1020 EVNLSYNAGY LDQLREWDGQ FGNRW*

Sequence ? help Back to Top

Protein Sequence Length: 1046 aa Download sequence Send to blast

MSNAANGDSS HPQQQQQSQC QQQQQQQQQQ QQQRKRKANR DSWPFMHAIM LLECFKDVWT  60
KSNMGNLTMA QWTEVSNKVN EFCGISMNEQ QCRTKVDNLK KRYKRERMKY APTGHTSPWE  120
FYVVMNKLFG NTTKLSAAGA SPISGQPAVG DGCGEDTEGS DEEDVVVLDN GGDLIFNIPA  180
ASLPTTSPQS GNSFGRGGHT LLLEGPGETG LDASPSENSN VVAGQAAETS SYQEFSNAAG  240
LSPRLGSGKK MTRATKRKRD SGVGVAAGDG YGDLLKEVER ERNVDWQRRL AELAKVDKKR  300
AKLLMRSQDG CVGFRNGPVD GALGAQQDGD EFDDLLDFER RREELKCKDL CEAERKVDLA  360
SKALCEAQQE RERLERDVTV AREAFEYRKA VGTGLKLSLK KYFVEKIQPA ERINASLTKF  420
PYYLSDVTRD FLVEALGSCL DQSRRASHLS GLCASSNTIL LNGPQNSEMY QEMLVKAIAH  480
DQGVALLMLD STDLAPQDHG DGYTDAVEAD DDMSKVTGFK YGFRKGDRVV SKRDERQRGR  540
VIAVSESVSG KIGILFDATE DALKLTTRFE DIRRSPPIEW HYAWQATISA LCEISRSAKP  600
LIVYFPELEQ WFERAVPVAW KQEIIDNLQR QLDKVIGNVA LIATFTSDAD EPLSVVKRKS  660
LKSIHNLFAN VVDIFPPKDD LDFWRWKALL LQDGERVTAN KNIQLLQKVQ VLTSHNLVCL  720
EFMEFQICDF LLTYSEYSRR QIDCQNFSFG RQVCSLDRAL LKLRRLKHAQ GPKLVAKDEF  780
EEAVLSTILA PNGTPKFDDV GALEDVKKIL GEHVVVPLLR PEHFAKGALA CPCKGVLLYG  840
PPGTGKTYLT KAVAAQSSAN LFWLRGNSIE YKIDSIFAIQ AGEAMTRFKF EFIYGWDRLM  900
SGIAEPVVVM AATCRPFHLD ESVIQKFPKR STFNNLSSRE KILVVLLAKE EIENGFDFKG  960
VAELTDGYSA NDLKNLTVAA AYRPVREMLE LEKAKRNAFG QPLPQELRPL TTQDFVSTLE  1020
EVNLSYNAGY LDQLREWDGQ FGNRW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3vfd_A	8e-30	792	1043	108	386	Spastin
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024537501.1	0.0	uncharacterized protein LOC9638407 isoform X1
TrEMBL	D8SB79	0.0	D8SB79_SELML; Uncharacterized protein
STRING	EFJ18343	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	4e-14	Trihelix family protein

Link Out ? help Back to Top
Phytozome	420183
Entrez Gene	9656312

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]