PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 419388
Common NameSELMODRAFT_419388
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 336aa    MW: 36958.2 Da    PI: 6.916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
419388genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-102532931055
             HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
             r+RR+riN+++  L+ l+P+ a      K++ +++Le+A++Y+k Lq
  419388 253 RQRRERINERLRALQGLVPNgA------KVDIVTMLEEAINYVKFLQ 293
             9*******************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-13242303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.294243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-12247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-11252296No hitNo description
PfamPF000101.7E-7253293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEHEDFAGSQ FCSIWESFSS DECGSGASSL NLPELCNSPD HNDNGSWLPP PPSSQIFHSK  60
PATALALDNH HHHHQNLDRI IDSFPSPSTS SSHHHTLISS PDSPLVFNFL LPQHQHTSSS  120
IQFGFPPVQL LQSPEEVIPS KPCVRTPPPK SSKASSSSSL NQNSSSSSMA VLENHCARIK  180
KERAEVQDEN CPAWKKKCLE SRGLESRTKS SVTLSAPEES STVTSALGPA LNTDGKPRAK  240
RGSATDPQSI YARQRRERIN ERLRALQGLV PNGAKVDIVT MLEEAINYVK FLQLQLLSSD  300
EYWMYAPTNY NGMNISLGMH LNMQSYLKIK ENVSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252257RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD8S8S80.0D8S8S8_SELML; Uncharacterized protein
STRINGEFJ190830.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-31bHLH family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]