PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

419055

Common Name

SELMODRAFT_419055

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 403aa MW: 42084.6 Da PI: 9.9789

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
419055	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.8	2.7e-13	45	128	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a++ + +l+ + l+ ++W+ev + + + ++ ++ + C++k++ l kryk +k+++ ++ ++s++p++d++e 419055 45 EWSEAAISTLIDAYTAKYGQLNGKGLRSKDWAEVVDTVnSNQKSAKTVEHCRNKMDTLTKRYKSEKKNKLSG---AESSWPWYDKME 128 5***********************************66777899****************999986...5567*****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-18	43	128	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MAISSPPLPP PSLAAPGRSP SLAATTKVSN CKENDEPSVR KDREEWSEAA ISTLIDAYTA 60 KYGQLNGKGL RSKDWAEVVD TVNSNQKSAK TVEHCRNKMD TLTKRYKSEK KNKLSGAESS 120 WPWYDKMEII RGCSPGKSVT AAAAAAAAAA AAAAAAASAS NSNISKAFVG VIPPGKERIR 180 NKRGKKVVLS NSEDASVQSQ SEKNKEGTYP PVKPVVVVAP SPGGGGIPAP AAPPPPPPSL 240 SFSKVDGPGF KPEIPTAPYA RMDSSTAHPN FHIPAAIPAW HNSPGAAPPP PPPAVTFPQV 300 AAAAAAAAAA AAREQQATGN SLDGGISTDH LSRSILELAG SMRSSAGNLA SSINGFTEVY 360 ARIEIAKMEM LKELELKRMQ VQLETAEILS RKRKRDSSSD PE*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MAISSPPLPP PSLAAPGRSP SLAATTKVSN CKENDEPSVR KDREEWSEAA ISTLIDAYTA  60
KYGQLNGKGL RSKDWAEVVD TVNSNQKSAK TVEHCRNKMD TLTKRYKSEK KNKLSGAESS  120
WPWYDKMEII RGCSPGKSVT AAAAAAAAAA AAAAAAASAS NSNISKAFVG VIPPGKERIR  180
NKRGKKVVLS NSEDASVQSQ SEKNKEGTYP PVKPVVVVAP SPGGGGIPAP AAPPPPPPSL  240
SFSKVDGPGF KPEIPTAPYA RMDSSTAHPN FHIPAAIPAW HNSPGAAPPP PPPAVTFPQV  300
AAAAAAAAAA AAREQQATGN SLDGGISTDH LSRSILELAG SMRSSAGNLA SSINGFTEVY  360
ARIEIAKMEM LKELELKRMQ VQLETAEILS RKRKRDSSSD PE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002979239.2	0.0	trihelix transcription factor ASIL2
TrEMBL	D8S7P2	0.0	D8S7P2_SELML; Uncharacterized protein
STRING	EFJ19647	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP11635	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	1e-25	Trihelix family protein

Link Out ? help Back to Top
Phytozome	419055
Entrez Gene	9634108

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]