PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

416079

Common Name

SELMODRAFT_416079

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 353aa MW: 41404.4 Da PI: 6.934

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
416079	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	32	2.7e-10	173	219	4	48
zf-Dof 4 kalkcpr.Cd.stntkfCyynnyslsqPryfCkaCrryWtkGGalrn 48 ++l cp Cd s+ tkf y+ n+ l q ry C C++++t GG+ r 416079 173 QHLLCPHsCDpSALTKFDYFENHMLIQARYKCTVCKQHFTLGGTTRA 219 56667744875889******************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-5	171	218	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.5E-10	173	219	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MIPQILPQVK CIWVVLVGGP IHHLQCRVYN ASGRGRYQSG SSSRSSSCED TKLSWQSDAG 60 IHCNFARIIT INTDFWRIHT SIVVVWIIYS NTIIRFDWIK HARPNFELVP SYWIKLSSTW 120 HWNLWHELLG WRRRLTYEWI PRLFSSLIKR KMRGVLVKDI HRLKDFMAFL RQQHLLCPHS 180 CDPSALTKFD YFENHMLIQA RYKCTVCKQH FTLGGTTRAK RAKKEDGGRP RKKPKKEQQQ 240 QKSRGQCLPC AIEEVQKLKM DLEDKGPSVE DEENFLRDFK VDDGDDLDLL LGLEEFIDPQ 300 SQGTRSDLGE EQNDFVMELE QQMEEEFPVD EENNFVMELE REIEEVSAMV KE*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MIPQILPQVK CIWVVLVGGP IHHLQCRVYN ASGRGRYQSG SSSRSSSCED TKLSWQSDAG  60
IHCNFARIIT INTDFWRIHT SIVVVWIIYS NTIIRFDWIK HARPNFELVP SYWIKLSSTW  120
HWNLWHELLG WRRRLTYEWI PRLFSSLIKR KMRGVLVKDI HRLKDFMAFL RQQHLLCPHS  180
CDPSALTKFD YFENHMLIQA RYKCTVCKQH FTLGGTTRAK RAKKEDGGRP RKKPKKEQQQ  240
QKSRGQCLPC AIEEVQKLKM DLEDKGPSVE DEENFLRDFK VDDGDDLDLL LGLEEFIDPQ  300
SQGTRSDLGE EQNDFVMELE QQMEEEFPVD EENNFVMELE REIEEVSAMV KE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	233	KRAKKEDGGRPRKKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8RY07	0.0	D8RY07_SELML; Uncharacterized protein
STRING	EFJ23014	0.0	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	416079
Entrez Gene	9646206

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]