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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 415191 | ||||||||
Common Name | SELMODRAFT_415191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | Dof | ||||||||
Protein Properties | Length: 204aa MW: 23169.3 Da PI: 9.4791 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 35.4 | 2.2e-11 | 141 | 186 | 3 | 48 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrn 48 e+ ++c C+s ntk ynn +++q ry C C+ +t+GG lr 415191 141 EQPVRCVFCESFNTKCEGYNNNNVKQKRYRCYDCKNRFTEGGKLRK 186 68899***************************************95 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00093 | 169 | 188 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 y+C dC+ +F+ L++H 415191 169 YRCYDCKNRFTEGGKLRKHR 188 9******************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-4 | 137 | 185 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.0E-11 | 142 | 186 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MDYYMLDHYR AIDSWEPRTF YYATDEEEGL ALYQQKMAAR EFYVQQLQNK VAEEASAAMD 60 PFTSAYGVDL RGFTRRLALA PDHPVAPASQ VPATQARVSN PPLTVTTRAR SLASAPRPSS 120 PSGVRVCSPI TTTTAMKPSD EQPVRCVFCE SFNTKCEGYN NNNVKQKRYR CYDCKNRFTE 180 GGKLRKHREI KAMLMKRKRE QGF* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D8RVB5 | 1e-151 | D8RVB5_SELML; Uncharacterized protein | ||||
STRING | EFJ23928 | 1e-152 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45610.1 | 5e-08 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | 415191 |
Entrez Gene | 9637833 |
Publications ? help Back to Top | |||
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