PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

414920

Common Name

SELMODRAFT_414920

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 394aa MW: 44599.6 Da PI: 4.4871

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
414920	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	41	3.9e-13	47	89	8	48
zf-Dof 8 cpr.Cdstn.tkfCyynnyslsqPryfCkaCrryWtkGGalrn 48 cp Cds+ tkf y+ n+ l qPry C C+r++t GG++r 414920 47 CPHgCDSSAlTKFDYFENHMLIQPRYKCTVCKRHFTLGGTIRA 89 5544987544*******************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.3E-13	45	89	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-5	47	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MRDVLVKDIH HLQNYPIFGS QTSQQAFATF GSVGELMAFL RQQHPLCPHG CDSSALTKFD 60 YFENHMLIQP RYKCTVCKRH FTLGGTIRAK RAKKEDGGRP RKRPKKEQQQ NKSRGQCLPR 120 EMLPSSTIPS AATSGSRGCA SPRRASRGAS RRTARPSPST TGQCPSQLVV RDQSLPVNAC 180 DLEGYVQDEE IFQEVEKLWC KMDLEDKGPS VEDEEKNFLR DFNVDDGDDR DLLLGLEEFS 240 GEDEEKNFLR DFNVDDGDDR DLLLGLEEFS GEDEEKNFLR DFNVDDGDDL DLLLGLEEFS 300 GEFSDPQGQG ARFDLGKKQN NFAMELVQQM EEDFPVPVVD EENDFAMELE REIEEASTTA 360 KEQAMLVWRN EVRKIRNQDN LTFGVGSAQT LKC*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MRDVLVKDIH HLQNYPIFGS QTSQQAFATF GSVGELMAFL RQQHPLCPHG CDSSALTKFD  60
YFENHMLIQP RYKCTVCKRH FTLGGTIRAK RAKKEDGGRP RKRPKKEQQQ NKSRGQCLPR  120
EMLPSSTIPS AATSGSRGCA SPRRASRGAS RRTARPSPST TGQCPSQLVV RDQSLPVNAC  180
DLEGYVQDEE IFQEVEKLWC KMDLEDKGPS VEDEEKNFLR DFNVDDGDDR DLLLGLEEFS  240
GEDEEKNFLR DFNVDDGDDR DLLLGLEEFS GEDEEKNFLR DFNVDDGDDL DLLLGLEEFS  300
GEFSDPQGQG ARFDLGKKQN NFAMELVQQM EEDFPVPVVD EENDFAMELE REIEEASTTA  360
KEQAMLVWRN EVRKIRNQDN LTFGVGSAQT LKC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	103	KRAKKEDGGRPRKRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8RU03	0.0	D8RU03_SELML; Uncharacterized protein
STRING	EFJ24120	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	2e-09	Dof family protein

Link Out ? help Back to Top
Phytozome	414920
Entrez Gene	9636728

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]