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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 414369 | ||||||||
Common Name | SELMODRAFT_414369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | Dof | ||||||||
Protein Properties | Length: 254aa MW: 28301.3 Da PI: 4.818 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 57 | 4.2e-18 | 52 | 116 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggrrknkk 60 ++ +cprC+s nt+f yynn + qPry C++C+ Wt+GG +r+v P Gg +r k+ 414369 52 DNVYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYACRSCKGKWTQGGKVRDVslsPTGGNKRTLKS 116 67889****************86533444*********************977778888887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-10 | 51 | 115 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-26 | 52 | 116 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 15.333 | 55 | 113 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MARASKRSRE DDGIMVLKKK RRLRSERACK LTAEEVRDQN LYGVWEHHDL PDNVYQCPRC 60 QSYNTRFDYY NNEKSTGKRD QPRYACRSCK GKWTQGGKVR DVSLSPTGGN KRTLKSHGGD 120 KITPVVQEEF VGESSQVMGD CVVGFDQTTY WEQGHGLGDC AQPISHEAFD QNSSWELLPA 180 LGQVPFGDCV QEVFAQASEL GDGVFADQVS QEFVGGVQGG DVQTNCWGQP QEFNDVFLDI 240 EGFLADLPEI QAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 22 | LKKKRRL |
2 | 17 | 21 | KKKRR |
3 | 17 | 22 | KKKRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002992665.1 | 0.0 | uncharacterized protein LOC9630524 | ||||
TrEMBL | D8RSI5 | 0.0 | D8RSI5_SELML; Uncharacterized protein | ||||
STRING | EFJ25074 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69570.1 | 3e-13 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | 414369 |
Entrez Gene | 9657038 |
Publications ? help Back to Top | |||
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