PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 413367
Common NameSELMODRAFT_413367
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 275aa    MW: 30811 Da    PI: 5.1526
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
413367genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.8e-105579126
             --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
             ykt+lC+ f + G C++ +rC+FaHg
   413367 55 YKTKLCSKFIA-GSCPFEARCNFAHG 79
             9**********.*************9 PP
2zf-CCCH32.91.1e-10106130126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              +kt++C+ff++ G C+y drC+F H+
   413367 106 FKTRPCKFFRE-GSCPYADRCTFLHD 130
              79*****9999.*************7 PP
3zf-CCCH344.8e-11150175126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              +kt++C+ +  +G C++G++C+FaHg
   413367 150 WKTRICNQWESSGRCSFGGKCHFAHG 175
              8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-85385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-155386IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7565481IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-65480IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-75579IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-11104131IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-8105131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.662105132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-7105131IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7106130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-16144181IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-9146180IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6149176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155149177IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8150175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEELREEDNG QKLLGDDSIT ASTQRTMMES SWYEFVDHQT SSSMAMDSSK AKVFYKTKLC  60
SKFIAGSCPF EARCNFAHGV EELRRPAADL VAAGPSFPLD PAAQSFKTRP CKFFREGSCP  120
YADRCTFLHD EAPSSSCSSI DHSSIRPPNW KTRICNQWES SGRCSFGGKC HFAHGAGELQ  180
KADNFQHKQL AEAAIYDCGF AWSSIDSYDW TPQGDQQLDF YTQQSQYSTD CPFQFPYLRP  240
QLYGYGVYPA LQNGFVGNGS SFQEQDDGRR YGDL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024533689.10.0uncharacterized protein LOC9637441
SwissprotQ84UQ31e-30C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLD8RP820.0D8RP82_SELML; Uncharacterized protein
STRINGEFJ262150.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-30C3H family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]