PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 413266
Common NameSELMODRAFT_413266
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 304aa    MW: 32660.2 Da    PI: 9.4698
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
413266genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.8e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+  l  +v+++G g W++I +        k R+  ++k++w+++
           413266  5 KQKWTPEEEAALRAGVEKYGAGKWRAIQKDPKfgpvlKSRSNVDLKDKWRNL 56
                     79****************************9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.42161IPR017930Myb domain
SuperFamilySSF466892.87E-16258IPR009057Homeodomain-like
SMARTSM007172.9E-9459IPR001005SANT/Myb domain
PfamPF002491.0E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-16556IPR009057Homeodomain-like
CDDcd116603.90E-23656No hitNo description
SMARTSM005265.1E-12115181IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.9E-15117191IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-14117196IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.658118186IPR005818Linker histone H1/H5, domain H15
PfamPF005381.5E-9121179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALRAGV EKYGAGKWRA IQKDPKFGPV LKSRSNVDLK DKWRNLSACS  60
GPGGPRSSKV LGLPSGGGMR KSMDAGLSPL QIDPLGAFPD PAAYQEMREM ASTPSETSPQ  120
SYDDFILEAI IVMKHPGGSS SAAIANFVEE HHMVPPNFRK LLNAKLKALT VQGKLMKVDQ  180
NYKINTGSSK PRGGQRPDSD DEKAFGRDAK RAVKSKKPKM DIETATLIVR ESEEASLVAA  240
TRVAEADALA QEAEMAAREL ETAEALAFEL DVAAEVAAYA LRPHRKSRAS LGGVYCNPIA  300
NQS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002972715.10.0single myb histone 1
RefseqXP_024533768.10.0single myb histone 1
TrEMBLD8RNW40.0D8RNW4_SELML; Uncharacterized protein
STRINGEFJ259360.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-43telomere repeat binding factor 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]