PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

412944

Common Name

SELMODRAFT_412944

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 298aa MW: 35429.6 Da PI: 7.3608

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
412944	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.7	8.4e-25	40	121	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +e+++Li++r e+e+++ ++k++k+lWe ++ km++rg++rs+ qCk+kw+nl +ryk + ++ + + ++cp+fd+l+ 412944 40 QWGFNETKELIAIRAELEKDFTQTKRNKTLWELIAGKMKDRGYRRSADQCKCKWKNLVNRYKGKELSDPE----NGRQCPFFDELD 121 6999********************************************************99888887....4678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.085	33	97	IPR017877	Myb-like domain
CDD	cd12203	6.54E-28	39	104	No hit	No description
Pfam	PF13837	1.2E-22	40	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MADEMFLAMP LQSLVGGSSA LENLSGGGRK GGKKDDRIPQ WGFNETKELI AIRAELEKDF 60 TQTKRNKTLW ELIAGKMKDR GYRRSADQCK CKWKNLVNRY KGKELSDPEN GRQCPFFDEL 120 DSIFKARLKN AGSKLLLESD GLIRPKKRTK QQQQQQPHLS DDPDNSDEEE EQEEEDPSGG 180 EDDRAVQKKK RKADKERQRA TAEKYRANNM QEVLEEFFQQ QQRMEEQWRE VFERRDRERR 240 DREAEWRQRM ERLEAERRAR EHEWWEREEV RRAQDELRSQ KREELLTALV MRVAQEP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	240	RRDRERRD

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00481	DAP	Transfer from AT5G01380	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002972506.1	0.0	trihelix transcription factor GT-3b
TrEMBL	D8RMU5	0.0	D8RMU5_SELML; Uncharacterized protein
STRING	EFJ26592	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2262	15	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	4e-34	Trihelix family protein

Link Out ? help Back to Top
Phytozome	412944
Entrez Gene	9650825

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]