PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 189aa MW: 20674.7 Da PI: 5.0147

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
412681	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.4	3.1e-14	24	70	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ K +Ka+ L +++e Ik+L 412681 24 KSHSEAERRRRERINKHLSTLRTLLPNT-----AKTDKASLLAEVIERIKEL 70 79***********************6.....5**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.691	21	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.4E-12	24	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-15	24	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.17E-5	24	75	No hit	No description
SuperFamily	SSF47459	1.44E-15	25	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-13	27	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	2.80E-9	110	176	No hit	No description
SuperFamily	SSF55021	1.6E-5	110	178	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.0E-6	110	172	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MTDLLSLCKS SAQADNAKAL AASKSHSEAE RRRRERINKH LSTLRTLLPN TAKTDKASLL 60 AEVIERIKEL KQQVAEISQF GPVPSDADEL DVDVMESPVD EGGKVLIKAS ICCADRPSLL 120 TDLVRTLKSL HLRTVKAEMA TMEGRTKNVF VMTIKDDAEL LEPTLACVEE ALKSVMEEPS 180 SKENQDDA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	34	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002971937.1	1e-133	transcription factor bHLH30
Refseq	XP_002977306.1	1e-133	transcription factor bHLH30
Swissprot	Q9S7Y1	9e-47	BH030_ARATH; Transcription factor bHLH30
TrEMBL	D8RL49	1e-131	D8RL49_SELML; Uncharacterized protein
STRING	EFJ21310	1e-132	(Selaginella moellendorffii)
STRING	EFJ26854	1e-132	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP377	15	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	412681
Entrez Gene	9639070 \| 9640581

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]