PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

411620

Common Name

SELMODRAFT_411620

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 346aa MW: 38304.6 Da PI: 8.3864

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
411620	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	113	133	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++Cp Cgk F + L H+r 411620 113 HECPECGKEFVSIKGLSGHMR 133 79*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.16E-7	111	135	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.2E-5	111	135	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0018	113	135	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.572	113	140	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.3E-9	113	137	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	115	135	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.16E-7	240	264	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MRSAKRKIVQ QEHEYEQQQQ QNGQVGEDRH EKDLVRSTKR KKAYPQLRHC LVEESLFQDL 60 DHSEDDDRSS GDDVQRAGGC NGLYALRANP KKNLKFAEEQ IKKKKLSSKG KDHECPECGK 120 EFVSIKGLSG HMRCHPESRI ARAAATIAPR SPAKIKIKEV IEEPDYESDT SLEQVYLRHW 180 AREEEEKKKK LGALMVEKWQ PLKIRIKCSS RALDPTGGGA DATVAEGSRK GDGCRLESTG 240 GAAVVECSRC KLAFESSTAL AAHHCVRKMS RKSKIISTKI EDALPKLPPS NGDPGVVNVP 300 VDIIADRVDE EDEVVCVDKG LTGGFKCLNC HRVFATGPCG LKCFV*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MRSAKRKIVQ QEHEYEQQQQ QNGQVGEDRH EKDLVRSTKR KKAYPQLRHC LVEESLFQDL  60
DHSEDDDRSS GDDVQRAGGC NGLYALRANP KKNLKFAEEQ IKKKKLSSKG KDHECPECGK  120
EFVSIKGLSG HMRCHPESRI ARAAATIAPR SPAKIKIKEV IEEPDYESDT SLEQVYLRHW  180
AREEEEKKKK LGALMVEKWQ PLKIRIKCSS RALDPTGGGA DATVAEGSRK GDGCRLESTG  240
GAAVVECSRC KLAFESSTAL AAHHCVRKMS RKSKIISTKI EDALPKLPPS NGDPGVVNVP  300
VDIIADRVDE EDEVVCVDKG LTGGFKCLNC HRVFATGPCG LKCFV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002989500.1	0.0	uncharacterized protein LOC9636375
TrEMBL	D8RII3	0.0	D8RII3_SELML; Uncharacterized protein
STRING	EFJ28253	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	5e-07	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	411620
Entrez Gene	9641319

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]