PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 411193
Common NameMADS8-1, SELMODRAFT_411193
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family M-type_MADS
Protein Properties Length: 202aa    MW: 22846.2 Da    PI: 3.978
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
411193genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.41.8e-081146338
            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38
            i  +++r  tf kR +g  KKAeEL +L+ a+v ++
  411193 11 IRQETKRRNTFRKRWEGARKKAEELHILTRARVRLM 46
            77899***************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.24E-10158IPR002100Transcription factor, MADS-box
SMARTSM004320.001159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.274146IPR002100Transcription factor, MADS-box
PfamPF003194.6E-81146IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGRKPTDLAY IRQETKRRNT FRKRWEGARK KAEELHILTR ARVRLMARFE GVLYVYNSSA  60
ESDVNNGVAD NDHQQAQDDV NTSSVDDNGE GEDGGSENEN VYENDENENG DEDEEEESDG  120
DGDGDGDWDG NGEATFKPYQ LNFSDFSSDL SFASRDAVVP QDLEWCFERK TLEQQQQTTA  180
VTKVNYSELL TEDEVNGFLN F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD8RGV51e-145D8RGV5_SELML; Type I MADS-box transcription factor
STRINGEFJ284301e-145(Selaginella moellendorffii)
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]