PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 409950
Common NameSELMODRAFT_409950
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 276aa    MW: 30303.8 Da    PI: 4.6373
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
409950genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.2e-062162561055
             HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
             + RR+ i+ +++ Lr ++P  a       ++ a++Le++++YI sL+
  409950 216 KSRRQTIKYKIQVLRNIIPGgA------GMEAASVLEETIRYITSLE 256
             88*****************966......59*************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.204206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-5212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-8213267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-8216267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.64E-5216259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MERVELDLSQ AELENVLHFS GAIGKEEVEF QFADRVKRPP PAKYVLFDQC GSEKVVVVHS  60
DGVSPVLPDA LVHDHNTTGS QTLQALLSSA GLQDKACDLQ VYKNAMAAAL LEFESSHSGE  120
ERLELFDSME QPLQANSGSW QENTDDLDAL MESDEEEVSE LNSASVTSAL TREDHSGGVE  180
LSGYLSSEGE TDGKGRSSRR SRDCRLSVRS TRSSKKSRRQ TIKYKIQVLR NIIPGGAGME  240
AASVLEETIR YITSLESMIL QFKAMKSEQP RPCCN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024529581.10.0uncharacterized protein LOC9658878 isoform X1
TrEMBLD8RCZ70.0D8RCZ7_SELML; Uncharacterized protein
STRINGEFJ302280.0(Selaginella moellendorffii)
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]