PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 407891 | ||||||||
Common Name | SELMODRAFT_407891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | HB-other | ||||||||
Protein Properties | Length: 237aa MW: 27114.8 Da PI: 8.3205 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 36.7 | 7.1e-12 | 196 | 230 | 20 | 54 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++n+yps+e++++ A+ lg+t++qV ++F N Ra+ 407891 196 RQNPYPSKEQKQKFAQDLGITKKQVENFFSNSRAR 230 25********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.191 | 171 | 234 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-4 | 173 | 236 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.04E-9 | 176 | 236 | No hit | No description |
SuperFamily | SSF46689 | 2.14E-13 | 176 | 235 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.7E-22 | 177 | 234 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-12 | 191 | 230 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGMSFLADQV HPLNYACMLM VTVWLSCSRI DRFAMLDQEA EITKFQWRWW QWKLRKYADS 60 NILSAYSTPV PTRNFPKNAR GATAIAVGMH GHCQHPNGGT LPITGQFEDD DLQEFLMKLD 120 EDKSASEKGT RGNLPKEHDL QEFVMELDED NSAGEEIPCQ ESPATTLKRR RELSGTRGNL 180 PKQAVEVMLS WLYANRQNPY PSKEQKQKFA QDLGITKKQV ENFFSNSRAR VLKRNK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D8R539 | 1e-179 | D8R539_SELML; Uncharacterized protein | ||||
STRING | EFJ32421 | 1e-180 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 8e-09 | BEL1-like homeodomain 4 |
Link Out ? help Back to Top | |
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Phytozome | 407891 |
Entrez Gene | 9652602 |
Publications ? help Back to Top | |||
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