PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GeBP

Protein Properties

Length: 624aa MW: 69596.2 Da PI: 8.1792

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
407447	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	38	4.7e-12	302	405	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgk.........spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskehdqkifelskki 95 + ws+eDei l+ +++ +ktg + ++ + ++ e +++ + sk+ql +K rr+K ++ ++vkk ++ +f+++ ++k+++l k i 407447 302 PQNWSSEDEIELISRILSD-MKTGIrppkrgsrgDNYHYWGDLLEACRSKFITDWSKEQLYDKYRRIKMRYDEMVKKerSEGITALKFKNPGEEKVYKLWKEI 403 678********999976.455544444433666677899*****************************999645555789*************** PP DUF573 96 Wg 97 ++ 407447 404 YD 405 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04145	2.2E-15	4	120	IPR007274	Ctr copper transporter
Pfam	PF04504	3.8E-21	303	405	IPR007592	Protein of unknown function DUF573

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0035434	Biological Process	copper ion transmembrane transport
GO:0016021	Cellular Component	integral component of membrane
GO:0005375	Molecular Function	copper ion transmembrane transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence Send to blast
MAPMSFFWHI KFTLLFPGWV PDTPLLYALT LIFAVVFAIA HEWIAAKRST ILAPSPSPNA 60 YSAPDLEKGA SSDEDPARNP PKSIVAIVLA VVIHGAYVIT SYLLMMMVMT FNAGIFIAVM 120 HLGARFELIE WRIRVYALGE PGFRPLAVIA PKELLSVMSR HADSDDSSNE GSGTDSEEDQ 180 KPDEMSSRSE GSSESDSGDE TEETESRYMV QKNDPGDKRT REDLAAVEPA AKKLKTLGGG 240 GVRPTIPTKS DSQIKTLPAN RTVATAKTPP VKKPVDPLPK KPGEAQAKKK EPEKEPTPKK 300 TPQNWSSEDE IELISRILSD MKTGIRPPKR GSRGDNYHYW GDLLEACRSK FITDWSKEQL 360 YDKYRRIKMR YDEMVKKERS EGITALKFKN PGEEKVYKLW KEIYDMQEQE ESEPPSAVKP 420 DANKKTRTPP PLKSSEDDTK KDVASTSKKP KPPAAAARQE PKQNGSVSEQ RQQQQQPQSP 480 PPPQAERNLT VAAMNELQKK SNAALSEMQG KIDEIMNDFH ARSQGMVQEA VKGAGGKAEW 540 LNEWLTFSMA RGSATPFFGM EMLGGIGTGW IGGPWDGSSP TAMKLKEHWL KQQEDELRVM 600 EQRVRLLQDL CRHQQELLKA RGH*

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence Send to blast

MAPMSFFWHI KFTLLFPGWV PDTPLLYALT LIFAVVFAIA HEWIAAKRST ILAPSPSPNA  60
YSAPDLEKGA SSDEDPARNP PKSIVAIVLA VVIHGAYVIT SYLLMMMVMT FNAGIFIAVM  120
HLGARFELIE WRIRVYALGE PGFRPLAVIA PKELLSVMSR HADSDDSSNE GSGTDSEEDQ  180
KPDEMSSRSE GSSESDSGDE TEETESRYMV QKNDPGDKRT REDLAAVEPA AKKLKTLGGG  240
GVRPTIPTKS DSQIKTLPAN RTVATAKTPP VKKPVDPLPK KPGEAQAKKK EPEKEPTPKK  300
TPQNWSSEDE IELISRILSD MKTGIRPPKR GSRGDNYHYW GDLLEACRSK FITDWSKEQL  360
YDKYRRIKMR YDEMVKKERS EGITALKFKN PGEEKVYKLW KEIYDMQEQE ESEPPSAVKP  420
DANKKTRTPP PLKSSEDDTK KDVASTSKKP KPPAAAARQE PKQNGSVSEQ RQQQQQPQSP  480
PPPQAERNLT VAAMNELQKK SNAALSEMQG KIDEIMNDFH ARSQGMVQEA VKGAGGKAEW  540
LNEWLTFSMA RGSATPFFGM EMLGGIGTGW IGGPWDGSSP TAMKLKEHWL KQQEDELRVM  600
EQRVRLLQDL CRHQQELLKA RGH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024527034.1	0.0	bromodomain-containing protein 4
Refseq	XP_024527035.1	0.0	bromodomain-containing protein 4
Refseq	XP_024527036.1	0.0	bromodomain-containing protein 4
Refseq	XP_024527037.1	0.0	bromodomain-containing protein 4
TrEMBL	D8R5M7	0.0	D8R5M7_SELML; Uncharacterized protein
STRING	EFJ32178	0.0	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	407447
Entrez Gene	9652720

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]