PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 406998
Common NameSELMODRAFT_406998
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 337aa    MW: 37444.7 Da    PI: 7.8571
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
406998genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.5e-11203228126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              y    C+++ +tG+C yGd+Ck+ H+
   406998 203 YQPDVCKDYKETGYCGYGDSCKYLHD 228
              66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.61E-9200233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765202230IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7202229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-12203233IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-9203228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.5E-14261320IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.81E-13265320No hitNo description
PfamPF139207.6E-9277319No hitNo description
PROSITE profilePS5008910.498278316IPR001841Zinc finger, RING-type
SMARTSM001843.2E-5278315IPR001841Zinc finger, RING-type
CDDcd001623.78E-8278319No hitNo description
PROSITE patternPS005180293302IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MATEEATAAT NCTFFKKPPK NRNLRKRPQE EEAAGDGAGS GSDEEKSAVV HKPKAPRKGG  60
FTTGVAQRSG ADEAAAAGAG STSKNTFFYE SSKEIQAQDS YATAALETET EFDKDARALR  120
EKVLQAAAKR IKSSSDPFDA TTNKEKGEDK GEKKPAIYKG LNAYTDHRAG FRRENSIASE  180
KAGGAHGPLR AASNVRMSVR FDYQPDVCKD YKETGYCGYG DSCKYLHDRG DYKSGWQLER  240
DWEEAQREKK ERLMRGIKEM VEGKEEDEEE DDELPFACFI CRESFVNPVV TACKHYFCES  300
CALEHYKKNK SCFVCNKPTN GLFNTAHIIL KKLRKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M5e-671233515319RING finger protein 113A
5z58_M5e-671233515319RING finger protein 113A
6ff4_t5e-671233515319RING finger protein 113A
6ff7_t5e-671233515319RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002965542.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-117C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLD8R3K90.0D8R3K9_SELML; Uncharacterized protein
STRINGEFJ329620.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-105C3H family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]