PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

405772

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 802aa MW: 87731.1 Da PI: 8.7236

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
405772	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H 405772 133 FSCTFCDRKFSSSQALGGHQNAH 155 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.63E-5	131	160	No hit	No description
PROSITE profile	PS50157	11.801	133	160	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	135	155	IPR007087	Zinc finger, C2H2
Pfam	PF02453	5.2E-12	591	731	IPR003388	Reticulon

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence Send to blast
MQIDGGLQAD RVTLDREDRS GEQEIEWRQR GEEEEEEEEE AVEEEEEKKE EEEEEEEEEA 60 RRNDDARKDW REELVEEEAA RELAATDFLS AGCQHSTSRS SASVASDQDQ AAEVATPTPA 120 STAATQSSPC RHFSCTFCDR KFSSSQALGG HQNAHKRERS AARRALRCHT SNLASFNGSW 180 SRYHHQNHGG GGARFSGGAA PFRVQSMGLQ AHSTTPMVAN TMCVPQPAAA AASSQHPGAA 240 AWSSLSPRAN IGKSSSLRQP AMTFARPAGA ASFRTGEFMR RCVDENFRKS KPLSKKPNGQ 300 RRFSRLLLAP SINGARVYRD RAEAMRRSSP MLVARRTPSP SSSSISSATA SGATLSQSRS 360 LPASIHPQQL GTSEESAANG SIAPAPAPPH SSEARVFRRA VSVPDRIMPA VAGVPDSMDI 420 DEESVRNAIL SRMQAEENGR SARRLRYDKL SRSEDQVVRR SGEAMAFSMR NGSAKKQRGD 480 AVRERNGGNG GGNVEVPCEQ TVEGNVLRQP VPVAVKVEPV EPESDPIQLK ASPVQKNSRQ 540 FKQKATELFA SLPSSFSFGG RASSVNGSPS FHSRPPGRDQ SSHKEDWMQL VMNVILWRDF 600 STSSLIFGAG AFAILSASLM QDIHLNIVTT LSYLALTYLS AVFFRINILR RAPSSSSDSW 660 KISEAAALEL TRGALPAFNA VLFKFSQLFS GDPGTTLKVA ATLCRMIPYA VAFFGAFLVP 720 KFYVSYTAQL HEKGIHLVSH FSSGWESCPH KKMVAGVAAV LIWKFLSTSS RFWIAFFSLV 780 AFKQYQNYRS EVPCEAIKKE H*

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence Send to blast

MQIDGGLQAD RVTLDREDRS GEQEIEWRQR GEEEEEEEEE AVEEEEEKKE EEEEEEEEEA  60
RRNDDARKDW REELVEEEAA RELAATDFLS AGCQHSTSRS SASVASDQDQ AAEVATPTPA  120
STAATQSSPC RHFSCTFCDR KFSSSQALGG HQNAHKRERS AARRALRCHT SNLASFNGSW  180
SRYHHQNHGG GGARFSGGAA PFRVQSMGLQ AHSTTPMVAN TMCVPQPAAA AASSQHPGAA  240
AWSSLSPRAN IGKSSSLRQP AMTFARPAGA ASFRTGEFMR RCVDENFRKS KPLSKKPNGQ  300
RRFSRLLLAP SINGARVYRD RAEAMRRSSP MLVARRTPSP SSSSISSATA SGATLSQSRS  360
LPASIHPQQL GTSEESAANG SIAPAPAPPH SSEARVFRRA VSVPDRIMPA VAGVPDSMDI  420
DEESVRNAIL SRMQAEENGR SARRLRYDKL SRSEDQVVRR SGEAMAFSMR NGSAKKQRGD  480
AVRERNGGNG GGNVEVPCEQ TVEGNVLRQP VPVAVKVEPV EPESDPIQLK ASPVQKNSRQ  540
FKQKATELFA SLPSSFSFGG RASSVNGSPS FHSRPPGRDQ SSHKEDWMQL VMNVILWRDF  600
STSSLIFGAG AFAILSASLM QDIHLNIVTT LSYLALTYLS AVFFRINILR RAPSSSSDSW  660
KISEAAALEL TRGALPAFNA VLFKFSQLFS GDPGTTLKVA ATLCRMIPYA VAFFGAFLVP  720
KFYVSYTAQL HEKGIHLVSH FSSGWESCPH KKMVAGVAAV LIWKFLSTSS RFWIAFFSLV  780
AFKQYQNYRS EVPCEAIKKE H*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	296	RRCVDENFRKSKPLSKKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024524526.1	0.0	reticulon-like protein B21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-13	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	405772