PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

405087

Common Name

SELMODRAFT_405087

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 928aa MW: 105170 Da PI: 7.2801

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
405087	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	39.3	1.3e-12	636	678	8	48
zf-Dof 8 cpr.Cdstn.tkfCyynnyslsqPryfCkaCrryWtkGGalrn 48 cp Cds+ tkf y+ n+ l qPry C C+r++t GG++r 405087 636 CPHgCDSSAlTKFDYFENHMLIQPRYKCTVCKRHFTLGGTIRA 678 5544987544*******************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03462	6.0E-53	27	212	IPR005139	Peptide chain release factor
Gene3D	G3DSA:1.20.58.410	4.4E-5	27	108	No hit	No description
SuperFamily	SSF75620	3.92E-104	28	343	No hit	No description
SMART	SM00937	5.3E-31	80	187	IPR005139	Peptide chain release factor
Gene3D	G3DSA:3.30.160.20	5.2E-34	219	294	IPR014720	Double-stranded RNA-binding domain
Pfam	PF00472	7.4E-39	220	328	IPR000352	Peptide chain release factor class I/class II
PROSITE pattern	PS00745	0	236	252	IPR000352	Peptide chain release factor class I/class II
ProDom	PD007478	3.0E-6	631	677	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-12	634	678	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006415	Biological Process	translational termination
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0016149	Molecular Function	translation release factor activity, codon specific

Sequence ? help Back to Top
Protein Sequence Length: 928 aa Download sequence Send to blast
MDFLSPDKHA PIPDDILRIL EKRMISIEDR HACLSKALLE PGIASDELIK MNKELRKLDY 60 SVDMIKALRA KEKEVIGLKE LVKESVEDEE MRRLASGELQ TATREVRDAQ HDVLLELIPK 120 DEADSRGAGG DEASIFASDL FKMYEKYTAN NSWRFEVLSI TTTDTRGYKE ASAVISGDGV 180 YGALKFESGV HRVQRVPVTE KAGRIHTSTA SVAILPEANE VDVEIRNDEI KIDTYRAGGA 240 GGQHVNTTCS AVRVTHAPTG IVVAIQDERS QHKNKAKALS ILYARLYELE RSRAAASRSE 300 LRQDQIGSSD RSERIRTYNF PQGRVTDHQV GVTQHAIEQI MEGIDVDNWK HLFERQDRHR 360 INVRGRHEAD HQRRMVHEMT AADGTLRVVS FPWCIKFRSV CKNLLKRMKL IGRRSSTRGV 420 LVKRSSNKHR ISWTASFAYR QQQKQKLKKS GSSLWSFSGY SKLKNSDSCT EALDGQEVIH 480 RNLEDSQASS SSFSFKNDAE DLGHGKGKKI LSPHPGVQRS EAMKLKSRWD EVVEMVVADS 540 FDDLVDLEEF LGYYMLRKKY QSLKACADFT HKIHSNKYSI PYQNICLNSA RMRDVLVKDI 600 HHLQDYPVFG SQTSAFVTFG SVGELMAFLR QQHPLCPHGC DSSALTKFDY FENHMLIQPR 660 YKCTVCKRHF TLGGTIRAKR AKKEDGGRPR KRPKKEQQQN KSRGQCLPRE MLPSSMIPSA 720 ATSGSRGCAS PRRASRGASR RTPRPSPRTT GQCPSQLVVR DQSLPVNACD LEGYVQDEEI 780 FQEVEKLWCK MDLEDKGPSV EDEEKNFLKD FNVDDGDDLD LLLGLEEFSG EFSDQQGQGT 840 RFDLGEEQNN FAMELVRQME EEFPIPVVDE ENDFAMELER EIEEASMTAK EEAMLVWKDE 900 VRKIRNQDNL TFTTNHIGFG GAQTLKC*

Sequence ? help Back to Top

Protein Sequence Length: 928 aa Download sequence Send to blast

MDFLSPDKHA PIPDDILRIL EKRMISIEDR HACLSKALLE PGIASDELIK MNKELRKLDY  60
SVDMIKALRA KEKEVIGLKE LVKESVEDEE MRRLASGELQ TATREVRDAQ HDVLLELIPK  120
DEADSRGAGG DEASIFASDL FKMYEKYTAN NSWRFEVLSI TTTDTRGYKE ASAVISGDGV  180
YGALKFESGV HRVQRVPVTE KAGRIHTSTA SVAILPEANE VDVEIRNDEI KIDTYRAGGA  240
GGQHVNTTCS AVRVTHAPTG IVVAIQDERS QHKNKAKALS ILYARLYELE RSRAAASRSE  300
LRQDQIGSSD RSERIRTYNF PQGRVTDHQV GVTQHAIEQI MEGIDVDNWK HLFERQDRHR  360
INVRGRHEAD HQRRMVHEMT AADGTLRVVS FPWCIKFRSV CKNLLKRMKL IGRRSSTRGV  420
LVKRSSNKHR ISWTASFAYR QQQKQKLKKS GSSLWSFSGY SKLKNSDSCT EALDGQEVIH  480
RNLEDSQASS SSFSFKNDAE DLGHGKGKKI LSPHPGVQRS EAMKLKSRWD EVVEMVVADS  540
FDDLVDLEEF LGYYMLRKKY QSLKACADFT HKIHSNKYSI PYQNICLNSA RMRDVLVKDI  600
HHLQDYPVFG SQTSAFVTFG SVGELMAFLR QQHPLCPHGC DSSALTKFDY FENHMLIQPR  660
YKCTVCKRHF TLGGTIRAKR AKKEDGGRPR KRPKKEQQQN KSRGQCLPRE MLPSSMIPSA  720
ATSGSRGCAS PRRASRGASR RTPRPSPRTT GQCPSQLVVR DQSLPVNACD LEGYVQDEEI  780
FQEVEKLWCK MDLEDKGPSV EDEEKNFLKD FNVDDGDDLD LLLGLEEFSG EFSDQQGQGT  840
RFDLGEEQNN FAMELVRQME EEFPIPVVDE ENDFAMELER EIEEASMTAK EEAMLVWKDE  900
VRKIRNQDNL TFTTNHIGFG GAQTLKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5j4d_JA	3e-84	80	343	63	335	Peptide chain release factor 1
5j4d_OC	3e-84	80	343	63	335	Peptide chain release factor 1
6b4v_JA	3e-84	80	343	63	335	Peptide chain release factor 1
6b4v_NC	3e-84	80	343	63	335	Peptide chain release factor 1
6dnc_MA	3e-84	80	343	63	335	Peptide chain release factor 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	678	692	KRAKKEDGGRPRKRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8QYC5	0.0	D8QYC5_SELML; Uncharacterized protein
STRING	EFJ35176	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	4e-09	Dof family protein

Link Out ? help Back to Top
Phytozome	405087
Entrez Gene	9655246

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]