PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

405079

Common Name

SELMODRAFT_405079

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 337aa MW: 38204 Da PI: 5.5221

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
405079	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	41.4	3.1e-13	45	87	8	48
zf-Dof 8 cpr.Cdstn.tkfCyynnyslsqPryfCkaCrryWtkGGalrn 48 cp Cds+ tkf y+ n+ l qPry C C+r++t GG++r 405079 45 CPHgCDSSAlTKFDYFENHMLIQPRYKCTVCKRHFTLGGTIRA 87 5544987544*******************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	5.8E-13	43	87	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-6	45	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MRDVLVKDIH HLQDYPVFGS QTSAFVTFGS VGELMAFLRQ QHPLCPHGCD SSALTKFDYF 60 ENHMLIQPRY KCTVCKRHFT LGGTIRAKRA KKEDGGRPRK RPKKEQQQNK SRGQCLPREM 120 LPSSMIPSAA TSGSRGCASP RRASRGASRR TARPSPSTTG QCPSQLVVRD QSLPVNACDL 180 EGYVQDEEIF QEVEKLWCKM DLEDKGPSVE DEEKNFLRDF NVDDGDDLDL LLGLEEFSRE 240 FSNPQGQGTR FDLGEEQNNF AMELVRQMEE EFPIPALDEE NDFAMELERE IEEASMTAKK 300 QAMLVWKDEV RKIRNQDNLT FTTNHIGFGG PQTLKC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	101	KRAKKEDGGRPRKRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8QYB8	0.0	D8QYB8_SELML; Uncharacterized protein
STRING	EFJ35172	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	1e-09	Dof family protein

Link Out ? help Back to Top
Phytozome	405079
Entrez Gene	9643511

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]