PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 404286
Common NameSELMODRAFT_404286
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C2H2
Protein Properties Length: 1185aa    MW: 132663 Da    PI: 5.9032
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
404286genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001710751100123
               EEET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
               ++C    C++sF++ s+L  H r+ +
   404286 1075 HTCDfdGCTMSFRTASELALHKRNiC 1100
               789999****************9877 PP
2zf-C2H214.50.0001111581182123
               EEETTTTEEESSHHHHHHHHHH..T CS
  zf-C2H2    1 ykCpdCgksFsrksnLkrHirt..H 23  
               y C+ Cgks++  s++ rH rt  H
   404286 1158 YACTECGKSYRFVSDFSRHKRTtgH 1182
               89*******************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.1E-101555IPR003349JmjN domain
PROSITE profilePS5118312.3031657IPR003349JmjN domain
PfamPF023753.1E-101750IPR003349JmjN domain
PROSITE profilePS5118427.718195348IPR003347JmjC domain
SuperFamilySSF511979.06E-14195363No hitNo description
SMARTSM005581.8E-30198348IPR003347JmjC domain
PfamPF023731.1E-23229328IPR003347JmjC domain
Gene3DG3DSA:3.30.160.607.2E-410751097IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551410751097IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.73910981127IPR007087Zinc finger, C2H2
SMARTSM003555.710981122IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011001122IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-411031128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.55E-1711111167No hitNo description
PROSITE profilePS5015712.65311281157IPR007087Zinc finger, C2H2
SMARTSM003558.7E-411281152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-1111291151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011301152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-1011521181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.8511581182IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.75911581184IPR007087Zinc finger, C2H2
PROSITE patternPS00028011601182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1185 aa     Download sequence    Send to blast
MVEVEVAPWI KGLPVAPEYR PSEADFVDPI SFVLRIEEEA GQFGICKIVP PTVKPRRKSL  60
LPNLYRSIAA AGKSSGKKAS IGLDANSLAG SKFTTRKQEL GDQTHAQTRH SKGASYTLDQ  120
FEIKAKAFTR AQVGTSRDVV PVVLEALFWK TIEEDKPVTV EYADYIPGSA FPESDSEQGD  180
GKKRKKSAVD REGWKLVNSP WNMRYLAKLQ GSLLRFMPGE VQGVTSPLLY IAMLFSHWSW  240
RTESHDLHFV DYLHLGAPKT WYVVPPGAAP AFEDVLRNQD DNSVVSPEVL VINGVPCCRL  300
VQNPGEYVIV FPRAYNFSFS HSFNCGETSS LASPGWLKAA KQAAARKELL CRPPMVCHEK  360
LLYQTALAFA KSSNAQDVRS SRLKHKMKVG AEEAVRTEFV NDMAKNQQVL DKLVSMTQAR  420
RVIFKGDDGK ESLSNLVNLG TIDSISLLSF VCETMEGADE KVGDDETLGK NSPPRIDWGN  480
VSCSICGILC YSCIVIVQPT SKASESIREG RLTVTDENHV QEDENGSSRK VLPPNGSRKA  540
GRDNLQRPYI MCSEHALQVS LLLQGCGGSL VLVVYHPEYE MFDKNAKDFA MDMSMRCRFR  600
DTTYDEENQQ DLQLISAAIE AAERPDNGWI DHVQARLPAT ASFLENSRAE TDEDDTELVV  660
EKTSKEKKVV GRWCGRVWRH DQTHAILGGC RTASKVEDNQ DELADSKTRK SKGGHDEDIL  720
KSEDYASLRK NCRKRKRTQM VAVWRVESEP QPCSTQISES LPSELEANDV KTEKVASLDE  780
DVKVSEPELR TENRSSEEGR PLPPLVCKEE KEENGKLELP CPEETTKPLV IVDCKEEPEI  840
HREAVVLDEE APQENVAAYK EVLPAPPEEP EQQSKEKEPD PVAAENEPVS VVITEDDGQH  900
GAGSTLCFSN SVWHDVPISF SPTFHSSYMD EKPKAWPTAH RTPLKIGIPK RKRTQIASSL  960
EASDEEKQLT DEDLEEDYDE EEEAEEDEEE QNYSNVSASS VEDDERAVDE AAEYGLESRA  1020
KRTKRKSWKA QAAEEQEKAP RRGGAKKAST STKRPGSEAT KRKLAPGMVH SHGLHTCDFD  1080
GCTMSFRTAS ELALHKRNIC TIKECSKRLC SHSYLMQHYR VHADDRPLKC PWKGCKKTFK  1140
WSWARTEHIR VHTGERPYAC TECGKSYRFV SDFSRHKRTT GHST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-5594018381Transcription factor jumonji (Jmj) family protein
6ip4_A1e-5594018381Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181185KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002962475.10.0probable lysine-specific demethylase ELF6
TrEMBLD8QUV30.0D8QUV3_SELML; Uncharacterized protein
STRINGEFJ359380.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP75061114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]