![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 403462 | ||||||||
Common Name | SELMODRAFT_403462 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 199aa MW: 22527.9 Da PI: 9.7811 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 28.5 | 3.2e-09 | 146 | 185 | 4 | 42 |
zf-Dof 4 kalkcprCds.tntkfCyynnyslsqPryfCkaCrryWtk 42 ++++cp C t+f +nny qPry Ck C+ Wtk 403462 146 EQIDCPWCGRiWCTRFYDFNNYKPGQPRYHCKPCKLTWTK 185 68899999762579*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 0.002 | 145 | 190 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.8E-8 | 147 | 185 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MKRKAQDAEI PMLDDLEDEV QGDGWEYEGG LACPPWDPEA LKSFCAMEDW CGEPVMARVK 60 PKEPANKPKI SSNPERPETL SKPKRKSSSE PKTPSEPKRP NISSEPKRPK TSKSCGGEAK 120 TRKNASAKVT PELRALLAKV RATLPEQIDC PWCGRIWCTR FYDFNNYKPG QPRYHCKPCK 180 LTWTKDKVPR PRSKRLAF* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 105 | 111 | PKRPKTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002961520.2 | 1e-130 | peroxidase 29 | ||||
TrEMBL | D8QRH5 | 1e-141 | D8QRH5_SELML; Uncharacterized protein | ||||
STRING | EFJ36781 | 1e-142 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G45610.1 | 1e-06 | Dof family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 403462 |
Entrez Gene | 9657264 |
Publications ? help Back to Top | |||
---|---|---|---|
|