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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 403458 | ||||||||
Common Name | SELMODRAFT_403458 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | Dof | ||||||||
Protein Properties | Length: 202aa MW: 22795.3 Da PI: 9.9936 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 28.5 | 3.3e-09 | 149 | 188 | 4 | 42 |
zf-Dof 4 kalkcprCds.tntkfCyynnyslsqPryfCkaCrryWtk 42 ++++cp C t+f +nny qPry Ck C+ Wtk 403458 149 EQIDCPWCGRiWCTRFYDFNNYKPGQPRYHCKPCKLTWTK 188 68899999762579*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 0.002 | 148 | 193 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.0E-8 | 150 | 188 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MKRKAQDAEI PMLDDLEDEV QGDGWEYEGG LACPPWDPEA LESFCAMDDW CGEPVMARVK 60 PKEPANKPKI SSEPERPATL SKPKRKSSSE PKRPKTSSVP KRPKTPSEPK RPKASKSCGG 120 EAKTRKNASA KVTPELRALL AKVRATLPEQ IDCPWCGRIW CTRFYDFNNY KPGQPRYHCK 180 PCKLTWTKDK VPRPRSKRLA F* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 94 | KRKSSSEPKRPK |
2 | 90 | 96 | PKRPKTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002961520.2 | 1e-128 | peroxidase 29 | ||||
TrEMBL | D8QRH1 | 1e-142 | D8QRH1_SELML; Uncharacterized protein | ||||
STRING | EFJ36778 | 1e-143 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45610.1 | 2e-06 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | 403458 |
Entrez Gene | 9657261 |
Publications ? help Back to Top | |||
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